These jupyter notebooks provide a tutorial for the HOOMD-blue simulation software and are included in HOOMD-blue's documentation.
- Introducing HOOMD-blue
- Introducing Molecular Dynamics
- Logging
- Parallel Simulations With MPI
- Custom Actions In Python
- Organizing and Executing Simulations
- Modelling Rigid Bodies
- Modelling Patchy Particles
You can install HOOMD-blue and run these examples interactively.
Clone the hoomd-examples repository and start jupyter notebook
$ git clone https://github.com/glotzerlab/hoomd-examples
$ cd hoomd-examples
$ jupyter lab
These examples use the following python packages:
Conda users can install these from conda-forge:
conda install -c conda-forge fresnel freud gsd hoomd jupyterlab matplotlib