Zika virus in Africa

Description

• The code provided supports the study titled 'Vector competence and biting behaviour shape the present and future of Zika virus transmission patterns in Africa'. This code runs alternative models for predicting R0, based on traits that vary with mosquito ancestry (i.e., genetic population variation) and climate.
• This project was run using R v4.1.0 and STAN v2.33 (https://mc-stan.org/users/documentation/)

Authors

• Jamie M. Caldwell, Louis Lambrechts, and Noah Rose

Files description

• Data: model_data_zikv.RData
  
• Model: R0_model.stan
  
• Code to run model: run_R0_stan_model.R
  
• Code to evaluate model fit and create figures: assess_fit_and_create_figures.R
  

Original (and sometime messy!) exploratory analyses can be found in a complementary repository 'https://github.com/jms5151/VBD_R0_constraints_Africa'