SC_pipeline.

A collection of Rmarkdowns implementing a scRNA-Seq workflow based on Seurat and other tools.

Name		Name	Last commit message	Last commit date
Latest commit History 62 Commits
SC_utils		SC_utils
archive		archive
.Rhistory		.Rhistory
Est_dbl_rate.Rmd		Est_dbl_rate.Rmd
GSEA_analysis.Rmd		GSEA_analysis.Rmd
LICENSE		LICENSE
README.md		README.md
Resolution fine-tuning.Rmd		Resolution fine-tuning.Rmd
Run1_analysis.Rmd		Run1_analysis.Rmd
Run2_analysis.Rmd		Run2_analysis.Rmd
Run3_analysis.Rmd		Run3_analysis.Rmd
Run4_analysis.Rmd		Run4_analysis.Rmd
SC_Prostate_analysis.Rmd		SC_Prostate_analysis.Rmd
Testing.Rmd		Testing.Rmd
cells_per_sample.Rmd		cells_per_sample.Rmd
clustering_resolution=0.1.Rmd		clustering_resolution=0.1.Rmd
clustering_resolution=0.5.Rmd		clustering_resolution=0.5.Rmd
clustering_resolution=1.Rmd		clustering_resolution=1.Rmd
marker_genes.Rmd		marker_genes.Rmd
similarity_test.Rmd		similarity_test.Rmd
test_std_norm.Rmd		test_std_norm.Rmd

jmgs7/SC_pipeline