Repeatability of tropical influenza epidemics
This repository contains the data and code used for the manuscript "Repeatability and timing of tropical influenza epidemics," submitted in Nov 2022.
Data folder contains data sets used in this study. Data across northern, central, and southern Vietnam represent detrended ILI+ incidence in each of the three regions for influenza subtypes A/H1 and A/H3 as well as influenza type B. Also included are detrended ILI+ data from the Netherlands and Denmark as well as detrended ILI data for two regions of the United States (HHS regions 1 and 9).
cpp_v4 folder contains C++ files used to implement the ordinary differential equations model used for this study
MCMC folder contains R files used to fit the model to the data using Markov Chain Monte Carlo simulations