Pinned

1. broadinstitute/celligner2 broadinstitute/celligner2 Public

   A new version of the celligner package using VAEs. Inspired from the Theis lab's scArches.

   Jupyter Notebook 4

2. broadinstitute/depmap_omics broadinstitute/depmap_omics Public

   What you need to process the Quarterly DepMap-Omics releases from Terra

   HTML 98 22

3. broadinstitute/genepy broadinstitute/genepy Public

   Forked from jkobject/genepy

   Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python

   Python 18 5

4. AMLproject AMLproject Public

   We are working on the AML pedDep project with DFCi & the BroadInsitute, looking at CRCs and their relation to genomic dependencies

   HTML 1

5. flatironinstitute/CaImAn flatironinstitute/CaImAn Public

   Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

   Python 603 355

6. broadinstitute/celligner broadinstitute/celligner Public

   tumor - cancer cell line alignment. Use it on the depmap portal or install it with pip.

   Jupyter Notebook 7 3