fix URLs

jknowles · May 31, 2023 · 8233a2a · 8233a2a
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -5,7 +5,7 @@ Version: 1.2.5
 Authors@R: c(person(c("Jason", "P."), "Becker", role = c("ctb"),
     email = "jason+sitemail@jbecker.co"),
     person(c("Jared", "E."), "Knowles", role=c("aut", "cre"),
-    email="jknowles@gmail.com"))
+    email="jared@civilytics.com"))
 Description: Collection of convenience functions to make working with
     administrative records easier and more consistent. Includes functions to
     clean strings, and identify cut points. Also includes three example data 

diff --git a/NEWS.md b/NEWS.md
@@ -3,6 +3,7 @@
 ## eeptools 1.2.5
 
 - Removed deprecated mapping functions to address #45 the sunsetting of `maptools` 
+- Cleaned up old and redirected URLs
 
 ## eeptools 1.2.3
 

diff --git a/R/autoplot.lm.R b/R/autoplot.lm.R
@@ -6,7 +6,7 @@
 ##' @param mfrow Describes the layout of the resulting function in the plot frames
 ##' @param ... additional parameters to pass through
 ##' @return A ggplot2 object that mimics the functionality of a plot of linear model.
-##' @references Modified from: http://librestats.com/2012/06/11/autoplot-graphical-methods-with-ggplot2/
+##' @references Modified from: https://librestats.com/2012/06/11/autoplot-graphical-methods-with-ggplot2/
 ##' @seealso \code{\link{plot.lm}} which this function mimics
 ##' @export
 ##' @import ggplot2

diff --git a/R/decomma.R b/R/decomma.R
@@ -5,7 +5,7 @@
 ##' @param x a character vector containing numbers with commas that should 
 ##' be coerced into being numeric.
 ##' @details This function assumes decimal point notation for numbers. For more 
-##' information, see \url{http://en.wikipedia.org/wiki/Decimal_mark#Countries_using_Arabic_numerals_with_decimal_point}.
+##' information, see \url{https://en.wikipedia.org/wiki/Decimal_mark#Countries_using_Arabic_numerals_with_decimal_point}.
 ##' @return A numeric
 ##' @author Jared E. Knowles
 ##' @export

diff --git a/R/eeptools-package.r b/R/eeptools-package.r
@@ -83,8 +83,8 @@ NULL
 #' @details This is the non-clean version of the data to allow for implementing 
 #' business rules to clean data.
 #' @source Available from the Strategic Data Project online at 
-#' \url{http://sdp.cepr.harvard.edu/toolkit-effective-data-use}
-#' @references Visit the Strategic Data Project online at:  \url{http://sdp.cepr.harvard.edu/}
+#' \url{https://sdp.cepr.harvard.edu/toolkit-effective-data-use}
+#' @references Visit the Strategic Data Project online at:  \url{https://sdp.cepr.harvard.edu/}
 #' @examples 
 #' data(stuatt)
 #' head(stuatt)

diff --git a/R/proficiency_tools.R b/R/proficiency_tools.R
@@ -17,7 +17,6 @@
 #' @param label logical, if TRUE cells will be labeled, else they will not
 #' @param shade logical, if TRUE cells will be shaded with Pearson residuals
 #' @param ... additional arguments to \code{\link{crosstabs}} e.g. digits
-#' @source http://www.rexdouglass.com/blog:3
 #' @keywords mosaic
 #' @keywords crosstabs
 #' @keywords vcd

diff --git a/README.Rmd b/README.Rmd
@@ -4,11 +4,7 @@ output:
     variant: markdown_github
 ---
 
-[![Build Status](https://travis-ci.org/jknowles/eeptools.png?branch=master)](https://travis-ci.org/jknowles/eeptools)
-[![Coverage Status](https://coveralls.io/repos/jknowles/eeptools/badge.svg?branch=master&service=github)](https://coveralls.io/github/jknowles/eeptools?branch=master)
-[![CRAN_Status_Badge](http://www.r-pkg.org/badges/version/eeptools)](https://cran.r-project.org/package=eeptools)
-[![Github Issues](http://githubbadges.herokuapp.com/jknowles/eeptools/issues.svg)](https://github.com/jknowles/eeptools/issues)
-[![Pending Pull-Requests](http://githubbadges.herokuapp.com/jknowles/eeptools/pulls.svg?style=flat)](https://github.com/jknowles/eeptools/pulls)
+[![CRAN_Status_Badge](https://www.r-pkg.org/badges/version/eeptools)](https://cran.r-project.org/package=eeptools)
 [![Downloads](https://cranlogs.r-pkg.org/badges/eeptools)](https://cran.r-project.org/package=eeptools)
 
 
@@ -42,7 +38,7 @@ head(stuatt)
 ```
 
 The `stuatt`, student attributes, dataset is provided from the [Strategic Data 
-Project Toolkit for Effective Data Use](http://sdp.cepr.harvard.edu/toolkit-effective-data-use). 
+Project Toolkit for Effective Data Use](https://sdp.cepr.harvard.edu/toolkit-effective-data-use). 
 This dataset is useful for learning how to clean data in R and how to aggregate 
 and summarize individual unit-record data into group-level data. 
 

diff --git a/README.md b/README.md
@@ -1,18 +1,9 @@
-[![Build
-Status](https://travis-ci.org/jknowles/eeptools.png?branch=master)](https://travis-ci.org/jknowles/eeptools)
-[![Coverage
-Status](https://coveralls.io/repos/jknowles/eeptools/badge.svg?branch=master&service=github)](https://coveralls.io/github/jknowles/eeptools?branch=master)
-[![CRAN\_Status\_Badge](http://www.r-pkg.org/badges/version/eeptools)](https://cran.r-project.org/package=eeptools)
-[![Github
-Issues](http://githubbadges.herokuapp.com/jknowles/eeptools/issues.svg)](https://github.com/jknowles/eeptools/issues)
-[![Pending
-Pull-Requests](http://githubbadges.herokuapp.com/jknowles/eeptools/pulls.svg?style=flat)](https://github.com/jknowles/eeptools/pulls)
+[![CRAN_Status_Badge](https://www.r-pkg.org/badges/version/eeptools)](https://cran.r-project.org/package=eeptools)
 [![Downloads](https://cranlogs.r-pkg.org/badges/eeptools)](https://cran.r-project.org/package=eeptools)
 
 <!-- README.md is generated from README.Rmd. Please edit that file -->
 
-Introduction
-============
+# Introduction
 
 `eeptools` is an R package that seeks to make it easier for analysts at
 state and local education agencies to analyze and visualize their data
@@ -21,8 +12,7 @@ around a number of R functions, `eeptools` strives to make many common
 tasks simpler and less prone to error specific to analysis of education
 data.
 
-Datasets
-========
+# Datasets
 
 `eeptools` provides three new datasets of interest to education
 researchers. These datasets are also used in the [R Bootcamp for
@@ -31,6 +21,7 @@ Education Analysts](https://www.jaredknowles.com/r-bootcamp)
 ``` r
 library(eeptools)
 #> Loading required package: ggplot2
+#> Warning: package 'ggplot2' was built under R version 4.2.3
 data("stuatt")
 head(stuatt)
 #>   sid school_year male race_ethnicity birth_date first_9th_school_year_reported
@@ -51,7 +42,7 @@ head(stuatt)
 
 The `stuatt`, student attributes, dataset is provided from the
 [Strategic Data Project Toolkit for Effective Data
-Use](http://sdp.cepr.harvard.edu/toolkit-effective-data-use). This
+Use](https://sdp.cepr.harvard.edu/toolkit-effective-data-use). This
 dataset is useful for learning how to clean data in R and how to
 aggregate and summarize individual unit-record data into group-level
 data.
@@ -116,8 +107,7 @@ The `midsch` dataset contains an analysis on abnormality in school
 average assessment scores. It contains observed and predicted values of
 aggregated test scores at the school level for a large midwestern state.
 
-Administrative Data Functions
-=============================
+# Administrative Data Functions
 
 For analysts using unit-record data of some type, there are several
 `calc` functions which automate common tasks including calculating ages
@@ -185,8 +175,7 @@ moves
 #> 4   4    NA
 ```
 
-Manipulate Data
-===============
+# Manipulate Data
 
 Another set of key functions in the package are to make basic data
 manipulation easier. One thing users of other statistical packaegs may
@@ -235,8 +224,7 @@ vector of numerics and ignoring any NAs (useful for inclusion in
 processing data where numerics are written with commas. `nth_max` allows
 you to identify the 2nd, 3rd, etc. maximum value in a vector.
 
-Regression Models
-=================
+# Regression Models
 
 `eeptools` includes ways to simplify the use of regression analyses
 tools recommended by Gelman and Hill 2006 through the `gelmansim`
@@ -245,6 +233,7 @@ function, which itself is a wrapper for the `arm::sim()` function.
 ``` r
 require(MASS)
 #> Loading required package: MASS
+#> Warning: package 'MASS' was built under R version 4.2.3
 #Examples of "sim" 
 set.seed (1)
 J <- 15
@@ -283,10 +272,10 @@ There is also a `ggplot2` version of `plot.lm` included:
 data(mpg)
 mymod <- lm(cty~displ + cyl + drv, data=mpg)
 autoplot(mymod)
-#> `geom_smooth()` using formula 'y ~ x'
-#> `geom_smooth()` using formula 'y ~ x'
-#> `geom_smooth()` using formula 'y ~ x'
-#> `geom_smooth()` using formula 'y ~ x'
+#> `geom_smooth()` using formula = 'y ~ x'
+#> `geom_smooth()` using formula = 'y ~ x'
+#> `geom_smooth()` using formula = 'y ~ x'
+#> `geom_smooth()` using formula = 'y ~ x'
 ```
 
 ![](tools/readme/README-lmautoplot-1.png)
@@ -304,8 +293,7 @@ crosstabplot(sampDat, "y", "fac", varnames = varnames,  label = TRUE,
 
 ![](tools/readme/README-crossplot-1.png)
 
-Helping Out
-===========
+# Helping Out
 
 Review the [Contributor
 Guide](https://github.com/jknowles/eeptools/blob/master/CONTRIBUTING.md)

diff --git a/cran-comments.md b/cran-comments.md
@@ -1,7 +1,5 @@
 ## Test environments
-* local Windows 10 install, R 3.6.3
-* ubuntu 14.04.5 (on travis-ci), R-Release
-* Win Builder: R-Release
+* local Windows 10 install, R 4.2.1
 * r-hub: "ubuntu-gcc-devel", "windows-x86_64-devel", "debian-gcc-release"
 
 ## Previous Issues with Test Errors have Been Resolved

diff --git a/man/autoplot.lm.Rd b/man/autoplot.lm.Rd
diff --git a/man/crosstabplot.Rd b/man/crosstabplot.Rd
diff --git a/man/decomma.Rd b/man/decomma.Rd
diff --git a/man/stuatt.Rd b/man/stuatt.Rd
diff --git a/tools/readme/README-lmautoplot-1.png b/tools/readme/README-lmautoplot-1.png