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JHU Applied Physics Laboratory Biological Sciences

Popular repositories

  1. Basestack Basestack Public

    Basestack is a platform for rapid and real time analysis of NGS data. It provides a executable application that connects standard bionformatics tools to a user interface. It is usable on all major …

    JavaScript 26 1

  2. taxtriage taxtriage Public

    TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomic NGS data. This flexible tool was developed with various us…

    Python 16 4

  3. mytax mytax Public

    mytax is a tool for building custom taxonomies, useful for nucleotide sequence classification

    JavaScript 11 2

  4. basestack_consensus basestack_consensus Public

    This repository is a Dockerized pipeline for creating consensus viral genomes from Oxford Nanopore data. This pipeline leverages the ARTIC Network bioinformatics pipeline and couples many annotatio…

    Shell 2 2

  5. AGAVE AGAVE Public

    Automated Genomics Application for Variant Exploration (AGAVE)

    Vue 2

  6. pathogenesis-gene-ontology pathogenesis-gene-ontology Public

    An ontology for the functional annotation of genes and gene products involved in pathogenesis

    C++ 1 1

Repositories

Showing 10 of 14 repositories
  • taxtriage Public

    TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomic NGS data. This flexible tool was developed with various use-cases of mNGS in mind.

    Python 16 MIT 4 5 1 Updated May 16, 2024
  • datasets Public

    General repository for example datasets

    HTML 0 0 0 0 Updated May 14, 2024
  • omics_workshop Public

    This is the central repository for data and example commands for bioinformatics workshop used for JHU-APL faculty and participant use

    HTML 0 0 0 0 Updated Apr 29, 2024
  • ONT-DART Public
    Vue 0 Apache-2.0 0 0 0 Updated Apr 22, 2024
  • Basestack Public

    Basestack is a platform for rapid and real time analysis of NGS data. It provides a executable application that connects standard bionformatics tools to a user interface. It is usable on all major Linux distributions, Mac OS, and Windows 10 or later

    JavaScript 26 GPL-3.0 1 3 1 Updated Mar 20, 2024
  • mytax Public

    mytax is a tool for building custom taxonomies, useful for nucleotide sequence classification

    JavaScript 11 AGPL-3.0 2 0 1 Updated Mar 20, 2024
  • AGAVE Public

    Automated Genomics Application for Variant Exploration (AGAVE)

    Vue 2 GPL-3.0 0 3 0 Updated Feb 14, 2024
  • GE-Workshop-Sandbox Public
    Dockerfile 0 0 0 0 Updated Sep 18, 2023
  • mytax_marine Public
    Shell 0 0 0 0 Updated May 12, 2023
  • mytax_marine_old Public Forked from jhuapl-bio/mytax

    mytax with added information on marine organisms, including common names, pictures, and population distribution

    Vue 0 AGPL-3.0 2 0 0 Updated Sep 14, 2022
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