Pinned

1. find--Co-infections find--Co-infections Public

   A pipeline to detect co-infections from Nanopore reads.

   C 2

2. pandoc-ditaa pandoc-ditaa Public

   Pandoc-ditaa is a pandoc lua filter that used ditaa to convert ascii digrams in markdown files into images.

   Lua

3. nbib-to-bib nbib-to-bib Public

   Converts a nbib file to a bibtex file

   C

4. alnSeq alnSeq Public

   AlnSeq runs a c coded Smith Waterman, Needleman Wunsch, and an Hirschberg. It can run as a standalone or as a library for python.

   C

5. fqGetIds fqGetIds Public

   A program using SMID vectors to extract fastq reads by read ids.

   C

6. artic-reference-benchmark artic-reference-benchmark Public

   My goal is to see how the choice of a reference genome affects the artic pipelines accuracy.

   C