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Simple GUI frontend for CMTK image registration tools in Fiji/ImageJ

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jefferis/fiji-cmtk-gui

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fiji-cmtk-gui

Working version of a simple GUI frontend for CMTK image registration tools in Fiji

Install

  • Install Fiji
  • Enable the CMTK Registration update site (http://sites.imagej.net/Jefferis), by following these detailed instructions. The update window should look something like this: ![Fiji Update Site Dialog](Web Resources/Fiji_CMTK_update_site.png "Update Site").
  • Run Plugins>CMTK Registration>Install CMTK to install CMTK

Use

Update

  • Use the Fiji updater to update files (but see below for Developer Install/Update)
  • To update the CMTK registration software, choose Install CMTK
    • This will compare the current version on the CMTK website with the installed version and offer to update if appropriate.

Problems

Developer Install

  • Download the zip file for this repository
  • Expand the zip file
  • Rename the newly expanded folder to CMTK_Registration
  • Move this inside the plugins subfolder of Fiji
    • To see this folder on a Mac you need to show Fiji in the Finder
    • Then Right Click and choose Show Package Contents
    • then navigate to the plugins subfolder
  • (Re)start Fiji
  • Choose Plugins ... CMTK Registration ... Install CMTK

Developer Update

  • To update the code for this GUI, choose Update to Development CMTK GUI

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Simple GUI frontend for CMTK image registration tools in Fiji/ImageJ

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