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Axon Segmentation in microscopic images based on machine learning

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AxonSegmentation

Axon segmentation with microscopic images and based on deep convolutional neural networks. The U-Net from ( Ronneberger et al.) is used as a pixel classifier model. Then an MRF is applied for the post-processing. The resulting axon segmentation mask feeds a myelin detector (Zaimi et al.)

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  • Python 99.1%
  • MATLAB 0.9%