altering rename_cmip6 to retain coord info instead of dropping (#345) #1121
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| name: CI | |
| on: | |
| push: | |
| branches: | |
| - "main" | |
| pull_request: | |
| branches: | |
| - "*" | |
| schedule: | |
| - cron: "0 13 * * 1" | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| detect-ci-trigger: | |
| name: detect ci trigger | |
| runs-on: ubuntu-latest | |
| if: github.event_name == 'push' || github.event_name == 'pull_request' | |
| outputs: | |
| triggered: ${{ steps.detect-trigger.outputs.trigger-found }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 2 | |
| - uses: xarray-contrib/ci-trigger@v1 | |
| id: detect-trigger | |
| with: | |
| keyword: "[full-cloud-ci]" | |
| build: | |
| name: Build (${{ matrix.python-version }} | ${{ matrix.os }}) | |
| if: github.repository == 'jbusecke/xmip' | |
| runs-on: ${{ matrix.os }} | |
| timeout-minutes: 45 | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-latest"] | |
| python-version: ["3.8", "3.9", "3.10"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Create conda environment | |
| uses: mamba-org/setup-micromamba@v1.8.1 | |
| with: | |
| cache-downloads: true | |
| cache-env: true | |
| micromamba-version: 'latest' | |
| environment-file: ci/environment.yml | |
| extra-specs: | | |
| python=${{ matrix.python-version }} | |
| - name: Install xMIP | |
| run: | | |
| python -m pip install -e . --no-deps | |
| conda list | |
| - name: Run Tests | |
| run: | | |
| pytest -n auto --cov=./ --cov-report=xml --ignore=tests/test_preprocessing_cloud.py | |
| - name: Upload code coverage to Codecov | |
| uses: codecov/codecov-action@v4.1.0 | |
| with: | |
| file: ./coverage.xml | |
| flags: unittests | |
| env_vars: OS,PYTHON | |
| name: codecov-umbrella | |
| fail_ci_if_error: false | |
| - name: Check Machine Config | |
| run: lscpu | |
| upstream-dev: | |
| name: Build (upstream-dev) | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Create conda environment | |
| uses: mamba-org/provision-with-micromamba@main | |
| with: | |
| cache-downloads: true | |
| cache-env: true | |
| micromamba-version: 'latest' | |
| environment-file: ci/environment-upstream-dev.yml | |
| extra-specs: | | |
| python=3.10 | |
| - name: Install xMIP | |
| run: | | |
| python -m pip install -e . --no-deps | |
| conda list | |
| - name: Run Tests | |
| run: | | |
| pytest -n auto --cov=./ --cov-report=xml --ignore=tests/test_preprocessing_cloud.py | |
| - name: Upload code coverage to Codecov | |
| uses: codecov/codecov-action@v4.1.0 | |
| with: | |
| file: ./coverage.xml | |
| flags: unittests | |
| env_vars: OS,PYTHON | |
| name: codecov-umbrella | |
| fail_ci_if_error: false | |
| - name: Check Machine Config | |
| run: lscpu | |
| - name: Run Tests | |
| run: | | |
| pytest -n auto --ignore=tests/test_preprocessing_cloud.py | |
| cloud-tests: | |
| needs: detect-ci-trigger | |
| if: needs.detect-ci-trigger.outputs.triggered == 'true' | |
| name: Build (cloud-data-tests | ${{ matrix.variable_id }} | ${{ matrix.experiment_id }} | ${{ matrix.grid_label }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| variable_id: ["thetao", "o2", "so", "uo"] | |
| experiment_id: ["historical", "ssp585"] | |
| grid_label: ["gn", "gr"] | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Create conda environment | |
| uses: mamba-org/provision-with-micromamba@main | |
| with: | |
| cache-downloads: true | |
| cache-env: true | |
| micromamba-version: 'latest' | |
| environment-file: ci/environment-upstream-dev.yml | |
| extra-specs: | | |
| python=3.10 | |
| - name: Install xMIP | |
| run: | | |
| python -m pip install -e . --no-deps | |
| conda list | |
| - name: Run Tests | |
| run: | | |
| pytest -n auto --cov=./ --cov-report=xml --ignore=tests/test_preprocessing_cloud.py | |
| - name: Upload code coverage to Codecov | |
| uses: codecov/codecov-action@v4.1.0 | |
| with: | |
| file: ./coverage.xml | |
| flags: unittests | |
| env_vars: OS,PYTHON | |
| name: codecov-umbrella | |
| fail_ci_if_error: false | |
| - name: Check Machine Config | |
| run: lscpu | |
| - name: Run Tests | |
| run: | | |
| pwd | |
| echo $PYTHONPATH | |
| pytest -n auto --reruns 1 --reruns-delay 5 tests/test_preprocessing_cloud.py --gl ${{ matrix.grid_label }} --ei ${{ matrix.experiment_id }} --vi ${{ matrix.variable_id }} |