ML for Microbial Genomics

Codebase | Rendered codebase w/ results

Presented at MLHD @ICTS | Aug 2023

Before the workshop, please ensure the following are set-up

• download and install R, RStudio | or have Posit Cloud set-up
• install.packages(c("tidyverse", "tidymodels", "glmnet", "vip", "ranger"))
• fork/star and clone this repo locally (or download the zipped file)

How to reach me

• Email
• Website: https://jravilab.github.io
• Twitter: @jravilab | @janani137
• Mastodon: @jravilab@genomic.social

License and citation

Uses MIT License

Citation

ML for Microbial Genomics.
Jacob Krol, Ethan Wolfe, Evan Brenner, Arjun Krishnan, Janani Ravi.
2023. Repository: https://github.com/jananiravi/2023-mlhd