Reformat shapeit .haps format to show samples by rows

The bash script reformats shapeit .haps file to show samples by rows instead of variants by rows

Usage

bash shapeit.reformat.sh in_ped in_haps out_haps out_map

Arguments (!File extensions should also be included)

in_ped --> .ped file that shapeit takes as input

in_haps --> .haps file that shapeit outputs

out_haps --> name of the output .haps file, which contains the same info as in_haps but with the samples distributed by rows

out_map --> name of the output .map file