Skip to content
View jamesmbaazam's full-sized avatar
☘️
Available
☘️
Available
40 followers · 356 following

Achievements

Achievement: Public SponsorAchievement: Pull Sharkx3Achievement: Pair Extraordinairex3Achievement: QuickdrawAchievement: YOLOAchievement: Arctic Code Vault Contributor
BetaSend feedback

Achievements

Achievement: Public SponsorAchievement: Pull Sharkx3Achievement: Pair Extraordinairex3Achievement: QuickdrawAchievement: YOLOAchievement: Arctic Code Vault Contributor
BetaSend feedback

Highlights

Organizations

@epiverse-trace
Block or Report

Block or report jamesmbaazam

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
jamesmbaazam/README.md

Hi there, I am a Research Software Engineer 💻 at the London School of Hygiene and Tropical Medicine, working on the Epiverse TRACE Initiative, which is a project to develop and maintain R packages for providing reproducible analytics support during epidemics.

What I do

📦: Develop epichains as a successor of bpmodels, which is an R package for analysing the distribution of the size and length of transmission chains.

📦: Contributor: EpiNow2, epinowcast, and scoringutils.

📦: Contribute to the packages in the Epiverse-TRACE Initiative.

🕵️‍♂️: Code reviews. See examples in:

🕵️‍♂️: Peer review of scientific manuscripts in Global Health, Epidemiology, and infectious disease modeling, and R software.

See more on my website.

Pinned

  1. epiverse-trace/epichains epiverse-trace/epichains Public

    [Not published - under active development] Methods for simulating and analysing the sizes and lengths of infectious disease transmission chains from branching process models

    R 4 1

  2. epiverse-trace/bpmodels epiverse-trace/bpmodels Public

    Methods for simulating and analysing the sizes and lengths of chains from branching process models

    R 7 7

  3. epiforecasts/EpiNow2 epiforecasts/EpiNow2 Public

    Estimate Realtime Case Counts and Time-varying Epidemiological Parameters

    R 104 31

  4. epinowcast/epinowcast epinowcast/epinowcast Public

    Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model with support for a range of reporting and generative processes.

    R 52 21