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Converts the string output of BPROM, a promoter prediction software tool, to the GFF3 file format. Used in a CPT Galaxy phage genomics workflow

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jakechamblee/BPROM_to_GFF3_converter

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BPROM to GFF3 converter

Uses regular expressions to extract data from the output of BPROM (a bacterial promoter prediction software tool) and converts it to the GFF3 file format.

For a converted example file, see 2022_1_23_bprom_as_gff3_AF083977.txt

Converts the following input:

bprom_input

To the following GFF3 output:

output

Run at the command line

python bprom_gff3_converter.py -f bprom_output_file_name/path.txt

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Converts the string output of BPROM, a promoter prediction software tool, to the GFF3 file format. Used in a CPT Galaxy phage genomics workflow

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