remove spleaf lib #182
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| name: CI | |
| on: [push] | |
| jobs: | |
| build: | |
| if: "!contains(github.event.head_commit.message, 'skip ci')" | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Checkout submodules | |
| shell: bash | |
| run: | | |
| auth_header="$(git config --local --get http.https://github.com/.extraheader)" | |
| git submodule sync --recursive | |
| git -c "http.extraheader=$auth_header" -c protocol.version=2 submodule update --init --force --recursive --depth=1 | |
| - name: Install anaconda | |
| run: | | |
| wget http://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O ~/miniconda.sh; | |
| bash ~/miniconda.sh -b -p $HOME/miniconda | |
| export PATH="$HOME/miniconda/bin:$PATH" | |
| conda config --set always_yes yes --set changeps1 no | |
| conda update -q conda | |
| conda install nomkl numpy scipy matplotlib | |
| conda install -c conda-forge pybind11 autograd celerite | |
| pip install corner | |
| - name: Install kima and pykima | |
| run: | | |
| export PATH="$HOME/miniconda/bin:$PATH" | |
| make -j 4 | |
| python setup.py install | |
| - name: Run 51Peg example | |
| run: | | |
| export PATH="$HOME/miniconda/bin:$PATH" | |
| cd tests/test_suite | |
| cp OPTIONS ../../examples/51Peg/OPTIONS | |
| kima-run ../../examples/51Peg -s 43 | |
| # test the output | |
| echo "Comparing output to known output for seed" | |
| cmp 51Peg_sample_seed43.txt ../../examples/51Peg/sample.txt | |
| - name: Run CoRoT7 example | |
| run: | | |
| export PATH="$HOME/miniconda/bin:$PATH" | |
| cd tests/test_suite | |
| cp OPTIONS ../../examples/CoRoT7/OPTIONS | |
| kima-run ../../examples/CoRoT7 -s 43 | |
| # test the output | |
| echo "Comparing output to known output for seed" | |
| cmp CoRoT7_sample_seed43.txt ../../examples/CoRoT7/sample.txt | |
| - name: Run BL2009 example | |
| run: | | |
| export PATH="$HOME/miniconda/bin:$PATH" | |
| cd tests/test_suite | |
| cp OPTIONS ../../examples/BL2009/OPTIONS | |
| kima-run ../../examples/BL2009 -s 43 | |
| # test the output | |
| echo "Comparing output to known output for seed" | |
| cmp BL2009_sample_seed43.txt ../../examples/BL2009/sample.txt | |
| - name: Run multi_instrument (1) example | |
| run: | | |
| export PATH="$HOME/miniconda/bin:$PATH" | |
| cd tests/test_suite | |
| cp OPTIONS ../../examples/multi_instrument/OPTIONS | |
| kima-run ../../examples/multi_instrument -s 43 | |
| # test the output | |
| echo "Comparing output to known output for seed" | |
| cmp multi_instrument_sample_seed43.txt ../../examples/multi_instrument/sample.txt | |
| # test showresults | |
| ( cd ../../examples/multi_instrument ; kima-showresults all --save-plots ) | |
| - name: Run multi_instrument (2) example | |
| run: | | |
| export PATH="$HOME/miniconda/bin:$PATH" | |
| cd tests/test_suite | |
| cp OPTIONS ../../examples/multi_instrument/OPTIONS | |
| # this is added to multi_instrument (1) | |
| # to read the 4th-column file instead of separate files | |
| sed -i -e '21,30d' -e 's/\/\/ datafile/datafile/' -e 's/\/\/ load/load/' ../../examples/multi_instrument/kima_setup.cpp | |
| kima-run ../../examples/multi_instrument -s 43 | |
| # test showresults | |
| ( cd ../../examples/multi_instrument ; kima-showresults all --save-plots ) | |
| - name: Run multi_instrument (3) example | |
| run: | | |
| export PATH="$HOME/miniconda/bin:$PATH" | |
| cd tests/test_suite | |
| cp OPTIONS ../../examples/multi_instrument/OPTIONS | |
| # this is added to multi_instrument (2) | |
| # sort the 4th-column file by time so instrument ids are intermingled | |
| CONT=`cat ../../examples/multi_instrument/HD106252_joined.txt`; echo "$CONT" | (sed -u 1q; sort -s -n -k 1,1) > ../../examples/multi_instrument/HD106252_joined.txt | |
| kima-run ../../examples/multi_instrument -s 43 | |
| # test showresults | |
| ( cd ../../examples/multi_instrument ; kima-showresults all --save-plots ) | |
| - name: Run studentT example | |
| run: | | |
| export PATH="$HOME/miniconda/bin:$PATH" | |
| cd tests/test_suite | |
| cp OPTIONS ../../examples/studentT/OPTIONS | |
| kima-run ../../examples/studentT -s 43 | |
| # test the output | |
| echo "Comparing output to known output for seed" | |
| cmp studentT_sample_seed43.txt ../../examples/studentT/sample.txt | |