Merge pull request #95 from isoverse/dev

update master to version 1.0.17

.Rbuildignore

@@ -16,4 +16,6 @@
 ^README\.Rmd$
 ^logo\.png$
 ^vignettes/cache$
-^vignettes/fig_output$
+^vignettes/fig_output$
+^doc$
+^Meta$

.gitignore

@@ -8,6 +8,9 @@
 .Rprofile
 # Example code in package build process
 *.xlsx
+*.rds
+*.rda
+*.feather
 *-Ex.R
 # Output files from R CMD build
 /*.tar.gz
@@ -43,3 +46,5 @@ vignettes/**/*.pdf
 # documentation
 !/docs/*
 inst/doc
+doc
+Meta

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: isoreader
 Title: Read IRMS data files
 Description: R interface to IRMS (isotope ratio mass spectrometry) file formats typically used in stable isotope geochemistry.
-Version: 1.0.12
+Version: 1.1.0
 Authors@R: person("Sebastian", "Kopf", email = "sebastian.kopf@colorado.edu", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-2044-0201"))
 URL: https://github.com/isoverse/isoreader
 BugReports: https://github.com/isoverse/isoreader/issues
@@ -11,9 +11,9 @@ Imports:
     methods,
     R.utils,
     magrittr,
-    rlang (>= 0.1.4),
+    rlang (>= 0.4.4),
     glue,
-    tidyselect (>= 0.2.3),
+    tidyselect (>= 1.0.0),
     vctrs,
     tibble,
     dplyr (>= 0.7.4),
@@ -41,4 +41,4 @@ License: GPL (>= 2) | file LICENSE
 Encoding: UTF-8
 LazyData: true
 VignetteBuilder: knitr
-RoxygenNote: 6.1.1
+RoxygenNote: 7.0.2

Makefile

@@ -11,5 +11,10 @@ vignettes:
 check:
 	Rscript -e "devtools::check()"
 
+# test package functionality without all example files
 auto_test:
+	R -q -e "rm(list = ls()); options("isoreader.run_file_tests" = FALSE); testthat::auto_test_package()"
+
+# test all example files
+auto_test_all:
 	R -q -e "rm(list = ls()); testthat::auto_test_package()"

NAMESPACE

@@ -36,6 +36,7 @@ S3method(print,continuous_flow)
 S3method(print,dual_inlet)
 S3method(print,iso_file)
 S3method(print,iso_file_list)
+S3method(print,scan)
 S3method(rename,iso_file)
 S3method(rename,iso_file_list)
 S3method(select,iso_file)
@@ -85,6 +86,7 @@ export(iso_export_to_rda)
 export(iso_filter_files)
 export(iso_filter_files_with_problems)
 export(iso_find_absolute_path_roots)
+export(iso_get_all_data)
 export(iso_get_bgrd_data)
 export(iso_get_data)
 export(iso_get_data_summary)
@@ -95,7 +97,10 @@ export(iso_get_problems_summary)
 export(iso_get_raw_data)
 export(iso_get_reader_example)
 export(iso_get_reader_examples)
+export(iso_get_reader_examples_folder)
+export(iso_get_resistors)
 export(iso_get_resistors_info)
+export(iso_get_standards)
 export(iso_get_standards_info)
 export(iso_get_supported_file_types)
 export(iso_get_units)
@@ -107,6 +112,7 @@ export(iso_is_dual_inlet)
 export(iso_is_file)
 export(iso_is_file_list)
 export(iso_is_object)
+export(iso_is_scan)
 export(iso_make_units_explicit)
 export(iso_make_units_implicit)
 export(iso_mutate_file_info)
@@ -118,7 +124,9 @@ export(iso_plot_raw_data)
 export(iso_read_continuous_flow)
 export(iso_read_dual_inlet)
 export(iso_read_scan)
+export(iso_register_continuous_flow_file_reader)
 export(iso_register_dual_inlet_file_reader)
+export(iso_register_scan_file_reader)
 export(iso_rename_file_info)
 export(iso_reread_archive)
 export(iso_reread_files)
@@ -178,10 +186,8 @@ importFrom(dplyr,vars)
 importFrom(feather,write_feather)
 importFrom(future,availableCores)
 importFrom(future,future)
-importFrom(future,multiprocess)
 importFrom(future,plan)
 importFrom(future,resolved)
-importFrom(future,sequential)
 importFrom(future,value)
 importFrom(glue,glue)
 importFrom(lazyeval,as.lazy)
@@ -223,9 +229,13 @@ importFrom(rhdf5,h5readAttributes)
 importFrom(rlang,"!!!")
 importFrom(rlang,"!!")
 importFrom(rlang,":=")
+importFrom(rlang,.data)
 importFrom(rlang,UQ)
+importFrom(rlang,as_label)
+importFrom(rlang,enexpr)
 importFrom(rlang,enquo)
 importFrom(rlang,eval_tidy)
+importFrom(rlang,expr)
 importFrom(rlang,f_lhs)
 importFrom(rlang,f_rhs)
 importFrom(rlang,get_expr)
@@ -237,7 +247,6 @@ importFrom(rlang,quo)
 importFrom(rlang,quo_is_null)
 importFrom(rlang,quo_is_symbol)
 importFrom(rlang,quo_squash)
-importFrom(rlang,quo_text)
 importFrom(rlang,quos)
 importFrom(rlang,sym)
 importFrom(stats,embed)
@@ -268,7 +277,6 @@ importFrom(tidyselect,ends_with)
 importFrom(tidyselect,everything)
 importFrom(tidyselect,matches)
 importFrom(tidyselect,starts_with)
-importFrom(tidyselect,vars_select)
 importFrom(utils,head)
 importFrom(utils,modifyList)
 importFrom(utils,packageVersion)