[test,fix,chore] Fix workflow test, rm build.h, fix fprintf str

isinaltinkaya · Dec 19, 2023 · 9d4a4da · 9d4a4da
1 parent 76f7c61
commit 9d4a4da
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Showing 4 changed files with 6 additions and 9 deletions.
diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
@@ -19,7 +19,9 @@ jobs:
     - uses: actions/checkout@v3
     - name: Install dependencies
       run: sudo apt-get update; sudo apt-get install libcurl4-openssl-dev
-    - name: make
-      run: make
+    - name: Install htslib 
+      run: sudo apt-get install libhts3 libhts-dev
+    - name: make HTSSRC="systemwide"
+      run: make HTSSRC="systemwide"
     - name: make test
       run: make test
diff --git a/.gitignore b/.gitignore
@@ -8,6 +8,7 @@ test/*_test*
 *.swp
 output.*
 version.h
+build.h
 
 vgcore*
 

diff --git a/build.h b/build.h
diff --git a/io.cpp b/io.cpp
@@ -834,7 +834,7 @@ argStruct* args_get(int argc, char** argv) {
     // PRINT ARGUMENTS
 
     ASSERT(asprintf(&args->versionInfo, "vcfgl [version: %s] [build: %s %s] [htslib: %s]\n", VCFGL_VERSION, __DATE__, __TIME__, hts_version()));
-    fprintf(stderr, args->versionInfo);
+    fprintf(stderr,"\n%s\n", args->versionInfo);
     fprintf(args->arg_fp, args->versionInfo);
 
     char depth_val[1024];