[feat,chore,refactor,test] Add amova ci and negative variance adjustm…

…ent, v0.5

[feat]

add amova confidence interval using bootstrap percentile method, normal
approximation, bootstrap basic method (reverse percentile method). When block
bootstrapping is enabled, the results from all 3 of these methods will be
reported by default.

add missing data check dmat->has_drop for neighbor joining

add negative variance adjustment and alternative results via setting negative
variance components to 0 and recalculating the phi statistics.

[chore]

change dxy and amova result printing for double values from %f (float) to %.17g (double)

deprec mathUtils

add cross-platform __FUNCTION__ identifier

change the name of --drop-pairs to --allow-missing-pairs for clarity

[refactor]

improve block bootstrapping samples printing

rename nsites variables in em.cpp for clarity (does not affect the results)

[test]

add block bootstrapping test case test18

Update test results with including negative variance adjusted results

Makefile

@@ -11,7 +11,7 @@ CXX ?= g++
 
 
 # No-compile targets
-NO_COMPILE = clean test help
+NO_COMPILE = help clean test test-%
 
 
 VAL_ADD_CRYPTOLIB = -lcrypto
@@ -203,7 +203,7 @@ DEP := $(OBJ:.o=.d)
 FLAGS := $(CPPFLAGS) $(CXXFLAGS)
 
 
-VERSION = v0.4
+VERSION = v0.5
 
 ifneq ($(wildcard .git),)
 VERSION := $(VERSION)-$(shell git describe --always)
@@ -212,7 +212,7 @@ endif
 VERSIONH = version.h
 
 $(VERSIONH):
-	$(if $(wildcards version.h),$(if $(findstring "$(VERSION)",$(shell cat version.h)),,$(shell echo '#define ngsAMOVA_VERSION "$(VERSION)"' > version.h)), $(shell echo '#define ngsAMOVA_VERSION "$(VERSION)"' > version.h))
+	$(if $(wildcards version.h),$(if $(findstring "$(VERSION)",$(shell cat version.h)),,$(shell echo '#define NGSAMOVA_VERSION "$(VERSION)"' > version.h)), $(shell echo '#define NGSAMOVA_VERSION "$(VERSION)"' > version.h))
 
 
 # Build info