eDNA results 🐠

This is a workflow for processing eDNA results from the eDNA Expeditions project into an integrated dataset. Source data are fetched from pacman-pipeline-results and edna-tracker-data.

How to read this dataset

Download the dataset

Download the zipped dataset from https://obis-edna-results.s3.amazonaws.com/output.zip and extract.

rm -r output output.zip
wget https://obis-edna-results.s3.amazonaws.com/output.zip
unzip output.zip

Read the dataset using R

See https://github.com/iobis/edna-results/blob/master/docs/read.md.

Species lists

This package also outputs species lists, browse the lists https://obis-edna-lists.s3.amazonaws.com/index.html.

For maintainers

To update the integrated dataset based on new data in pacman-pipeline-results or new annotations in this repository, run the workflow in Actions.