Conda yaml
channels:
- conda-forge
- bioconda
dependencies:
- conda-forge::h5py=3.2.1
- conda-forge::llvmlite=0.34.0
- conda-forge::numba=0.51.2
- conda-forge::networkx=2.5.1
- conda-forge::joblib=1.0.1
- conda-forge::python-igraph=0.9.1
- conda-forge::louvain=0.7.0
- conda-forge::cython=0.29.23
- conda-forge::click=7.1.2
- bioconda::samtools=1.12
- pip
- pip:
- anndata==0.7.6
- fa2==0.3.5
- scanpy==1.7.2
- scipy==1.6.3
- scrublet==0.2.3
- scikit-learn==0.24.2
- phate==1.0.7
- PhenoGraph==1.5.7
- leidenalg==0.8.4
- plotly==4.14.3
- iplotter==0.4.3
- cellbrowser==1.0.1
- scvelo==0.2.3
- pybind11==2.6.2
- hnswlib==0.5.1
- velocyto==0.17.17
- umap-learn==0.4.6
- matplotlib==3.4.1
- matplotlib-inline==0.1.2
- ipykernel==5.5.5
- nbconvert==6.0.7
