Skip to content

Issues: imgag/megSAP

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

42 Open 151 Closed
42 Open 151 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

NSX: copy logs of Dragen analysis
#267 opened May 14, 2024 by leonschuetz
Getting problem when I type "./download_dbs.sh"
#266 opened May 9, 2024 by ThomasYang0615
HPO to genes: check if HGMD helps at all (it has a lot of singletons)
#265 opened Apr 24, 2024 by marc-sturm
@marc-sturm
LongReads: create missing files for older LR samples
#264 opened Apr 22, 2024 by leonschuetz
5 tasks
LongReads: Create low-confident region
#263 opened Apr 22, 2024 by leonschuetz
LongReads: Add tool to annotate SR variants to LR GSvar file
#262 opened Apr 22, 2024 by leonschuetz
3 tasks
Improve PRS computation
#261 opened Apr 19, 2024 by leonschuetz
5 tasks
@leonschuetz
1
bwa-mem2 on newer AMD Servers (srv010)
#260 opened Apr 17, 2024 by leonschuetz
1
NovaSeqX: mapping of cfDNA and RNA
#254 opened Mar 20, 2024 by leonschuetz
5 tasks
Check EGFR variant not getting called
#249 opened Feb 22, 2024 by Ott-Alexander
5 tasks done
1
allow custom columns in GSvar
#248 opened Feb 9, 2024 by marc-sturm
4 tasks
@marc-sturm
LongReads: remove unmapped bams
#247 opened Feb 8, 2024 by leonschuetz
6 of 8 tasks
1
multi-sample calling using gVCF for short-read
#240 opened Jan 25, 2024 by marc-sturm
2 tasks
GSVar improvements for Longread analysis
#238 opened Jan 18, 2024 by caspargross
12 of 18 tasks
1
Replace RNA expression analysis by DROP pipeline
#235 opened Dec 7, 2023 by marc-sturm
@marc-sturm
Test targeted callers with DRAGEN
#227 opened Oct 23, 2023 by marc-sturm
@marc-sturm
Test validation datasets
#224 opened Oct 11, 2023 by marc-sturm
1
Implement trio/multi
#221 opened Sep 27, 2023 by marc-sturm
9
Test high-sensitivity mode on Dragen
#216 opened Aug 31, 2023 by marc-sturm
2 tasks
@marc-sturm
1
RNA annotation Indels
#215 opened Aug 30, 2023 by Ott-Alexander
1 of 10 tasks
add non-patient-specific targeted cfDNA
#212 opened Aug 9, 2023 by leonschuetz
Benchmark FANSe
#211 opened Aug 3, 2023 by Ott-Alexander
2 tasks
RNA: imprinting & ASE
#210 opened Jul 24, 2023 by leonschuetz
4 tasks
LongReads: Re-analysis of long-read projects to get more background data
#207 opened Jul 20, 2023 by leonschuetz
2 tasks done
1
illumina Nova Seq X Plus
#206 opened Jul 20, 2023 by leonschuetz
4 of 7 tasks
@leonschuetz @Ott-Alexander
14
ProTip! Follow long discussions with comments:>50.