fix: update TIFF decoder (#575)

Fixes: #574

.eslintrc.yml

@@ -9,6 +9,7 @@ parserOptions:
   sourceType: module
 
 rules:
+  func-names: off
   import/no-cycle: off
   import/no-extraneous-dependencies: off
   # TODO: re-enable once https://github.com/benmosher/eslint-plugin-import/issues/2063 is fixed.

package.json

@@ -59,21 +59,21 @@
     ]
   },
   "devDependencies": {
-    "@babel/cli": "^7.14.5",
-    "@babel/core": "^7.14.6",
-    "@babel/plugin-transform-block-scoping": "^7.14.5",
-    "@babel/plugin-transform-modules-commonjs": "^7.14.5",
-    "@babel/preset-env": "^7.14.7",
-    "@types/jest": "^26.0.23",
+    "@babel/cli": "^7.16.0",
+    "@babel/core": "^7.16.0",
+    "@babel/plugin-transform-block-scoping": "^7.16.0",
+    "@babel/plugin-transform-modules-commonjs": "^7.16.0",
+    "@babel/preset-env": "^7.16.0",
+    "@types/jest": "^27.0.2",
     "benchmark": "^2.1.4",
     "cheminfo-build": "^1.1.11",
     "cross-env": "^7.0.3",
-    "eslint": "^7.30.0",
-    "eslint-config-cheminfo": "^5.2.4",
+    "eslint": "^8.1.0",
+    "eslint-config-cheminfo": "^7.1.2",
     "esm": "^3.2.25",
-    "jest": "^27.0.6",
-    "jest-matcher-deep-close-to": "^2.0.1",
-    "prettier": "^2.3.2",
+    "jest": "^27.3.1",
+    "jest-matcher-deep-close-to": "^3.0.2",
+    "prettier": "^2.4.1",
     "rimraf": "^3.0.2",
     "sha.js": "^2.4.11"
   },
@@ -84,7 +84,7 @@
     "fast-bmp": "^1.0.0",
     "fast-jpeg": "^1.0.1",
     "fast-list": "^1.0.3",
-    "fast-png": "^5.0.4",
+    "fast-png": "^6.1.0",
     "has-own": "^1.0.1",
     "image-type": "^4.1.0",
     "is-array-type": "^1.0.0",
@@ -101,7 +101,7 @@
     "monotone-chain-convex-hull": "^1.0.0",
     "new-array": "^1.0.0",
     "robust-point-in-polygon": "^1.0.3",
-    "tiff": "^5.0.0",
+    "tiff": "^5.0.2",
     "web-worker-manager": "^0.2.0"
   },
   "engines": {

src/image/compute/__tests__/histogram.js

@@ -57,7 +57,7 @@ describe('calculate the histogram', function () {
     );
     let image2 = image.mask();
     let histogram = image2.getHistogram();
-    expect(histogram[0]).toStrictEqual(16);
-    expect(histogram[1]).toStrictEqual(9);
+    expect(histogram[0]).toBe(16);
+    expect(histogram[1]).toBe(9);
   });
 });

src/image/roi/__tests__/feretDiameters.test.js

@@ -125,7 +125,7 @@ describe('Feret diameters', function () {
           [2, 2],
           [0, 0],
         ],
-        max: 4.242,
+        max: 4.2426,
         maxLine: [
           [0, 3],
           [3, 0],

src/image/roi/__tests__/findCorrespondingRoi.js

@@ -45,15 +45,15 @@ describe('findCorrespondingRoi', function () {
       4 / 9,
       3 / 9,
     ]);
-    expect(related[0].same).toStrictEqual(5);
-    expect(related[0].opposite).toStrictEqual(4);
-    expect(related[0].total).toStrictEqual(9);
+    expect(related[0].same).toBe(5);
+    expect(related[0].opposite).toBe(4);
+    expect(related[0].total).toBe(9);
     expect(Array.from(related[1].id)).toStrictEqual([-1]);
     expect(Array.from(related[1].surface)).toStrictEqual([16]);
     expect(Array.from(related[1].roiSurfaceCovered)).toStrictEqual([1]);
-    expect(related[1].same).toStrictEqual(16);
-    expect(related[1].opposite).toStrictEqual(0);
-    expect(related[1].total).toStrictEqual(16);
+    expect(related[1].same).toBe(16);
+    expect(related[1].opposite).toBe(0);
+    expect(related[1].total).toBe(16);
   });
   it('should yield the correct object containing corresponding roi ids and pixels (switch imgs from prev test)', function () {
     let img1 = new Image(
@@ -94,24 +94,24 @@ describe('findCorrespondingRoi', function () {
     expect(Array.from(related[0].id)).toStrictEqual([1]);
     expect(Array.from(related[0].surface)).toStrictEqual([2]);
     expect(Array.from(related[0].roiSurfaceCovered)).toStrictEqual([1]);
-    expect(related[0].same).toStrictEqual(2);
-    expect(related[0].opposite).toStrictEqual(0);
-    expect(related[0].total).toStrictEqual(2);
+    expect(related[0].same).toBe(2);
+    expect(related[0].opposite).toBe(0);
+    expect(related[0].total).toBe(2);
     expect(Array.from(related[1].id)).toStrictEqual([1]);
     expect(Array.from(related[1].surface)).toStrictEqual([3]);
     expect(Array.from(related[1].roiSurfaceCovered)).toStrictEqual([1]);
-    expect(related[1].same).toStrictEqual(3);
-    expect(related[1].opposite).toStrictEqual(0);
-    expect(related[1].total).toStrictEqual(3);
+    expect(related[1].same).toBe(3);
+    expect(related[1].opposite).toBe(0);
+    expect(related[1].total).toBe(3);
     expect(Array.from(related[2].id)).toStrictEqual([-1, 1]);
     expect(Array.from(related[2].surface)).toStrictEqual([16, 4]);
     expect(Array.from(related[2].roiSurfaceCovered)).toStrictEqual([
       16 / 20,
       4 / 20,
     ]);
-    expect(related[2].same).toStrictEqual(16);
-    expect(related[2].opposite).toStrictEqual(4);
-    expect(related[2].total).toStrictEqual(20);
+    expect(related[2].same).toBe(16);
+    expect(related[2].opposite).toBe(4);
+    expect(related[2].total).toBe(20);
   });
 
   it('should yield the correct object containing 2 elements with same roi ids and different number of pixels (covering entire image)', function () {
@@ -154,15 +154,15 @@ describe('findCorrespondingRoi', function () {
     expect(Array.from(related[0].id)).toStrictEqual([-1]);
     expect(Array.from(related[0].surface)).toStrictEqual([9]);
     expect(Array.from(related[0].roiSurfaceCovered)).toStrictEqual([1]);
-    expect(related[0].same).toStrictEqual(0);
-    expect(related[0].opposite).toStrictEqual(9);
-    expect(related[0].total).toStrictEqual(9);
+    expect(related[0].same).toBe(0);
+    expect(related[0].opposite).toBe(9);
+    expect(related[0].total).toBe(9);
     expect(Array.from(related[1].id)).toStrictEqual([-1]);
     expect(Array.from(related[1].surface)).toStrictEqual([16]);
     expect(Array.from(related[1].roiSurfaceCovered)).toStrictEqual([1]);
-    expect(related[1].same).toStrictEqual(16);
-    expect(related[1].opposite).toStrictEqual(0);
-    expect(related[1].total).toStrictEqual(16);
+    expect(related[1].same).toBe(16);
+    expect(related[1].opposite).toBe(0);
+    expect(related[1].total).toBe(16);
   });
 
   it('should yield the correct object containing 1 element with one roi id and al of pixels (covering entire image)', function () {

src/image/utility/__tests__/getSimilarity.js

@@ -11,7 +11,7 @@ describe('calculate the overlap with another image', function () {
     expect(similarity).toBe(1);
 
     similarity = image.getSimilarity(image2);
-    expect(similarity).toStrictEqual(1);
+    expect(similarity).toBe(1);
 
     similarity = image.getSimilarity(image2, {
       average: false,