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@iAMB-RWTH-Aachen

iAMB

Institute of Applied Microbiology - RWTH Aachen University

Popular repositories

  1. Opol-GSMM Opol-GSMM Public

    Genome scale metabolic model for Ogataea polymorpha NCYC495.

    HTML 2

  2. PAModelpy PAModelpy Public

    Repository for source code of the PAModelpy package

    Jupyter Notebook 2

  3. Ustilago_maydis-GEM Ustilago_maydis-GEM Public

    The genome scale metabolic model iUma22 for Ustilago maydis

    HTML 1 1

  4. Tutorial_GEM_and-_FBA Tutorial_GEM_and-_FBA Public

    Tutorial for simulation of constraint based models with CobraPy.

    Jupyter Notebook 1 1

  5. Exp2Ipynb Exp2Ipynb Public

    Exp2Ipynb is a collection of Python Jupyter Notebooks for the analysis of gene expression. The input is a library of sequences with equal length mapped to associated expression strength.

    TeX 1

  6. PathwayToolsAnnotationParser PathwayToolsAnnotationParser Public

    Matlab script that parses files exported from Pathway Tools for common annotations in order to complete models created with the COBRA Toolbox. This script finds those annotations that the COBRA par…

    M

Repositories

Showing 9 of 9 repositories
  • PAModelpy Public

    Repository for source code of the PAModelpy package

    Jupyter Notebook 2 MIT 0 0 0 Updated May 16, 2024
  • BioLabSim Public
    Jupyter Notebook 0 MIT 0 0 3 Updated Apr 12, 2024
  • Ustilago_maydis-GEM Public

    The genome scale metabolic model iUma22 for Ustilago maydis

    HTML 1 CC-BY-4.0 1 0 0 Updated Apr 10, 2024
  • Opol-GSMM Public

    Genome scale metabolic model for Ogataea polymorpha NCYC495.

    HTML 2 0 0 0 Updated Nov 29, 2023
  • yeast-GEM-iAMBvolatiles Public Forked from SysBioChalmers/yeast-GEM

    The consensus GEM for Saccharomyces cerevisiae. Added with volatiles from the iAMB.

    MATLAB 0 CC-BY-4.0 44 0 0 Updated May 25, 2023
  • RWTH-QMB1 Public
    Jupyter Notebook 0 0 0 1 Updated Jun 22, 2022
  • Exp2Ipynb Public

    Exp2Ipynb is a collection of Python Jupyter Notebooks for the analysis of gene expression. The input is a library of sequences with equal length mapped to associated expression strength.

    TeX 1 GPL-3.0 0 0 0 Updated Jun 9, 2022
  • Tutorial_GEM_and-_FBA Public

    Tutorial for simulation of constraint based models with CobraPy.

    Jupyter Notebook 1 1 0 0 Updated Nov 11, 2020
  • PathwayToolsAnnotationParser Public

    Matlab script that parses files exported from Pathway Tools for common annotations in order to complete models created with the COBRA Toolbox. This script finds those annotations that the COBRA parses misses. Before invoking the script, make sure to have imported your model of interest from a Pathway Tools SMBL file with COBRA first.

    M 0 0 0 0 Updated Aug 1, 2014

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