BIFO
Popular repositories
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RiboDetector
RiboDetector PublicAccurate and rapid RiboRNA sequences Detector based on deep learning
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traitar
traitar PublicForked from aweimann/traitar
From genomes to phenotypes: Traitar, the microbial trait analyzer
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Phylogeography_Paper
Phylogeography_Paper PublicThis repository contains all data and code for the manuscript "Phylogeographic reconstruction using air transportation data and its application to the 2009 H1N1 influenza A pandemic".
Repositories
- AMR_benchmarking Public
- django_ngs_metadata_collection Public
Django App for collection and storage of sequenicing orders for the sequencing facility
- covid-germany-mcmc Public
SARS-CoV-2 lineage importations and spread are reduced after nonpharmaceutical interventions in phylogeographic analyses
- seminar-dlmb-2024 Public
Materials for the "Seminar: Deep Learning for Molecular Biology" on 2024 at TU Braunschweig (https://www.helmholtz-hzi.de/en/research/research-topics/bacterial-and-viral-pathogens/computational-biology-of-infection-research/workshop/seminar-deep-learning-for-molecular-biology/)
- mag Public Forked from nf-core/mag
Best practice pipeline for assembly and binning of metagenomes based on CAMI2 challenge, adapted from nf-core/mag
- taxprofiler Public Forked from nf-core/taxprofiler
Highly parallelised multi-taxonomic profiling of shotgun metagenomic data
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- corona_protein_dynamics Public
Mutation dynamics analysis of SARS-Cov-2 S-protein based on phylogenetics and statistics
- AMR_prediction_pipeline Public