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Fix indexing error for reverse strand in calc_orf_gc #101

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Fix indexing error for reverse strand in calc_orf_gc #101

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2 changes: 1 addition & 1 deletion node.c
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Original file line number Diff line number Diff line change
Expand Up @@ -552,7 +552,7 @@ void calc_orf_gc(unsigned char *seq, unsigned char *rseq, int slen, struct
is_gc(seq, nod[i].ndx-2);
}
else if(nod[i].strand == -1) {
for(j = last[fr]+3; j <= nod[i].ndx; j+=3)
for(j = last[fr]+1; j <= nod[i].ndx; j+=3)
gc[fr] += is_gc(seq, j) + is_gc(seq, j+1) + is_gc(seq, j+2);
gsize = (float)(abs(nod[i].stop_val-nod[i].ndx)+3.0);
nod[i].gc_cont = gc[fr]/gsize;
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