Update to v0.5.9

hackingmaterials · Aug 9, 2019 · ca47e18 · ca47e18
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diff --git a/docs/_sources/changelog.rst.txt b/docs/_sources/changelog.rst.txt
@@ -5,6 +5,12 @@
 matminer Changelog
 ==================
 
+**v0.5.9**
+
+* add Meredig composition featurizer (A. Trewartha)
+* update / fix Miedema model parameters (Q. Wang)
+* update code for latest pymatgen (A. Dunn)
+
 **v0.5.8**
 
 * optimizations for Global Instability Index featurizer (N. Wagner, L. Ward)

diff --git a/docs/_sources/contributors.rst.txt b/docs/_sources/contributors.rst.txt
@@ -57,4 +57,5 @@ Other
 * Kamal Choudhary (NIST)
 * Tian Xie (MIT)
 * Daiki Nishikawa
-* Nicholas Wagner (Northwestern University)
+* Nicholas Wagner (Northwestern University)
+* Amalie Trewartha (LBNL)
diff --git a/docs/_sources/featurizer_summary.rst.txt b/docs/_sources/featurizer_summary.rst.txt
@@ -54,6 +54,7 @@ Features based on a material's composition.
 Name                              Description
 ===============================   ================================================================================================================================================================================================================================================================================================================================================================================================================
 :code:`ElementProperty`           Class to calculate elemental property attributes. `[more] <https://hackingmaterials.github.io/matminer/matminer.featurizers.html#matminer.featurizers.composition.ElementProperty>`_
+:code:`Meredig`                   Class to calculate features as defined in Meredig et. al. `[more] <https://hackingmaterials.github.io/matminer/matminer.featurizers.html#matminer.featurizers.composition.Meredig>`_
 :code:`OxidationStates`           Statistics about the oxidation states for each specie. `[more] <https://hackingmaterials.github.io/matminer/matminer.featurizers.html#matminer.featurizers.composition.OxidationStates>`_
 :code:`AtomicOrbitals`            Determine HOMO/LUMO features based on a composition. `[more] <https://hackingmaterials.github.io/matminer/matminer.featurizers.html#matminer.featurizers.composition.AtomicOrbitals>`_
 :code:`BandCenter`                Estimation of absolute position of band center using electronegativity. `[more] <https://hackingmaterials.github.io/matminer/matminer.featurizers.html#matminer.featurizers.composition.BandCenter>`_

diff --git a/docs/_sources/matminer.data_retrieval.rst.txt b/docs/_sources/matminer.data_retrieval.rst.txt
@@ -6,7 +6,7 @@ Subpackages
 
 .. toctree::
 
-    matminer.data_retrieval.tests
+   matminer.data_retrieval.tests
 
 Submodules
 ----------
@@ -15,63 +15,63 @@ matminer.data\_retrieval.retrieve\_AFLOW module
 -----------------------------------------------
 
 .. automodule:: matminer.data_retrieval.retrieve_AFLOW
-    :members:
-    :undoc-members:
-    :show-inheritance:
+   :members:
+   :undoc-members:
+   :show-inheritance:
 
 matminer.data\_retrieval.retrieve\_Citrine module
 -------------------------------------------------
 
 .. automodule:: matminer.data_retrieval.retrieve_Citrine
-    :members:
-    :undoc-members:
-    :show-inheritance:
+   :members:
+   :undoc-members:
+   :show-inheritance:
 
 matminer.data\_retrieval.retrieve\_MDF module
 ---------------------------------------------
 
 .. automodule:: matminer.data_retrieval.retrieve_MDF
-    :members:
-    :undoc-members:
-    :show-inheritance:
+   :members:
+   :undoc-members:
+   :show-inheritance:
 
 matminer.data\_retrieval.retrieve\_MP module
 --------------------------------------------
 
 .. automodule:: matminer.data_retrieval.retrieve_MP
-    :members:
-    :undoc-members:
-    :show-inheritance:
+   :members:
+   :undoc-members:
+   :show-inheritance:
 
 matminer.data\_retrieval.retrieve\_MPDS module
 ----------------------------------------------
 
 .. automodule:: matminer.data_retrieval.retrieve_MPDS
-    :members:
-    :undoc-members:
-    :show-inheritance:
+   :members:
+   :undoc-members:
+   :show-inheritance:
 
 matminer.data\_retrieval.retrieve\_MongoDB module
 -------------------------------------------------
 
 .. automodule:: matminer.data_retrieval.retrieve_MongoDB
-    :members:
-    :undoc-members:
-    :show-inheritance:
+   :members:
+   :undoc-members:
+   :show-inheritance:
 
 matminer.data\_retrieval.retrieve\_base module
 ----------------------------------------------
 
 .. automodule:: matminer.data_retrieval.retrieve_base
-    :members:
-    :undoc-members:
-    :show-inheritance:
+   :members:
+   :undoc-members:
+   :show-inheritance:
 
 
 Module contents
 ---------------
 
 .. automodule:: matminer.data_retrieval
-    :members:
-    :undoc-members:
-    :show-inheritance:
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/docs/_sources/matminer.data_retrieval.tests.rst.txt b/docs/_sources/matminer.data_retrieval.tests.rst.txt
@@ -8,55 +8,55 @@ matminer.data\_retrieval.tests.test\_retrieve\_AFLOW module
 -----------------------------------------------------------
 
 .. automodule:: matminer.data_retrieval.tests.test_retrieve_AFLOW
-    :members:
-    :undoc-members:
-    :show-inheritance:
+   :members:
+   :undoc-members:
+   :show-inheritance:
 
 matminer.data\_retrieval.tests.test\_retrieve\_Citrine module
 -------------------------------------------------------------
 
 .. automodule:: matminer.data_retrieval.tests.test_retrieve_Citrine
-    :members:
-    :undoc-members:
-    :show-inheritance:
+   :members:
+   :undoc-members:
+   :show-inheritance:
 
 matminer.data\_retrieval.tests.test\_retrieve\_MDF module
 ---------------------------------------------------------
 
 .. automodule:: matminer.data_retrieval.tests.test_retrieve_MDF
-    :members:
-    :undoc-members:
-    :show-inheritance:
+   :members:
+   :undoc-members:
+   :show-inheritance:
 
 matminer.data\_retrieval.tests.test\_retrieve\_MP module
 --------------------------------------------------------
 
 .. automodule:: matminer.data_retrieval.tests.test_retrieve_MP
-    :members:
-    :undoc-members:
-    :show-inheritance:
+   :members:
+   :undoc-members:
+   :show-inheritance:
 
 matminer.data\_retrieval.tests.test\_retrieve\_MPDS module
 ----------------------------------------------------------
 
 .. automodule:: matminer.data_retrieval.tests.test_retrieve_MPDS
-    :members:
-    :undoc-members:
-    :show-inheritance:
+   :members:
+   :undoc-members:
+   :show-inheritance:
 
 matminer.data\_retrieval.tests.test\_retrieve\_MongoDB module
 -------------------------------------------------------------
 
 .. automodule:: matminer.data_retrieval.tests.test_retrieve_MongoDB
-    :members:
-    :undoc-members:
-    :show-inheritance:
+   :members:
+   :undoc-members:
+   :show-inheritance:
 
 
 Module contents
 ---------------
 
 .. automodule:: matminer.data_retrieval.tests
-    :members:
-    :undoc-members:
-    :show-inheritance:
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/docs/_sources/matminer.datasets.rst.txt b/docs/_sources/matminer.datasets.rst.txt
@@ -6,7 +6,7 @@ Subpackages
 
 .. toctree::
 
-    matminer.datasets.tests
+   matminer.datasets.tests
 
 Submodules
 ----------
@@ -15,31 +15,31 @@ matminer.datasets.convenience\_loaders module
 ---------------------------------------------
 
 .. automodule:: matminer.datasets.convenience_loaders
-    :members:
-    :undoc-members:
-    :show-inheritance:
+   :members:
+   :undoc-members:
+   :show-inheritance:
 
 matminer.datasets.dataset\_retrieval module
 -------------------------------------------
 
 .. automodule:: matminer.datasets.dataset_retrieval
-    :members:
-    :undoc-members:
-    :show-inheritance:
+   :members:
+   :undoc-members:
+   :show-inheritance:
 
 matminer.datasets.utils module
 ------------------------------
 
 .. automodule:: matminer.datasets.utils
-    :members:
-    :undoc-members:
-    :show-inheritance:
+   :members:
+   :undoc-members:
+   :show-inheritance:
 
 
 Module contents
 ---------------
 
 .. automodule:: matminer.datasets
-    :members:
-    :undoc-members:
-    :show-inheritance:
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/docs/_sources/matminer.datasets.tests.rst.txt b/docs/_sources/matminer.datasets.tests.rst.txt
@@ -8,47 +8,47 @@ matminer.datasets.tests.base module
 -----------------------------------
 
 .. automodule:: matminer.datasets.tests.base
-    :members:
-    :undoc-members:
-    :show-inheritance:
+   :members:
+   :undoc-members:
+   :show-inheritance:
 
 matminer.datasets.tests.test\_convenience\_loaders module
 ---------------------------------------------------------
 
 .. automodule:: matminer.datasets.tests.test_convenience_loaders
-    :members:
-    :undoc-members:
-    :show-inheritance:
+   :members:
+   :undoc-members:
+   :show-inheritance:
 
 matminer.datasets.tests.test\_dataset\_retrieval module
 -------------------------------------------------------
 
 .. automodule:: matminer.datasets.tests.test_dataset_retrieval
-    :members:
-    :undoc-members:
-    :show-inheritance:
+   :members:
+   :undoc-members:
+   :show-inheritance:
 
 matminer.datasets.tests.test\_datasets module
 ---------------------------------------------
 
 .. automodule:: matminer.datasets.tests.test_datasets
-    :members:
-    :undoc-members:
-    :show-inheritance:
+   :members:
+   :undoc-members:
+   :show-inheritance:
 
 matminer.datasets.tests.test\_utils module
 ------------------------------------------
 
 .. automodule:: matminer.datasets.tests.test_utils
-    :members:
-    :undoc-members:
-    :show-inheritance:
+   :members:
+   :undoc-members:
+   :show-inheritance:
 
 
 Module contents
 ---------------
 
 .. automodule:: matminer.datasets.tests
-    :members:
-    :undoc-members:
-    :show-inheritance:
+   :members:
+   :undoc-members:
+   :show-inheritance: