Update to v0.6.0

hackingmaterials · Aug 30, 2019 · 385dfd2 · 385dfd2
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diff --git a/docs/_sources/changelog.rst.txt b/docs/_sources/changelog.rst.txt
@@ -5,6 +5,11 @@
 matminer Changelog
 ==================
 
+**v0.6.0**
+
+* Ensure Yang omega is never NaN in YangSolidSolution featurizer (L. Ward)
+* More complete BV sum table, some code cleanups (N. Wagner)
+
 **v0.5.9**
 
 * add Meredig composition featurizer (A. Trewartha)

diff --git a/docs/_static/documentation_options.js b/docs/_static/documentation_options.js
@@ -1,6 +1,6 @@
 var DOCUMENTATION_OPTIONS = {
     URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
-    VERSION: '0.5.9',
+    VERSION: '0.6.0',
     LANGUAGE: 'None',
     COLLAPSE_INDEX: false,
     FILE_SUFFIX: '.html',

diff --git a/docs/changelog.html b/docs/changelog.html
@@ -4,7 +4,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml">
   <head>
     <meta charset="utf-8" />
-    <title>MatMiner Changelog &#8212; matminer 0.5.9 documentation</title>
+    <title>MatMiner Changelog &#8212; matminer 0.6.0 documentation</title>
     <link rel="stylesheet" href="_static/nature.css" type="text/css" />
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <script type="text/javascript" id="documentation_options" data-url_root="./" src="_static/documentation_options.js"></script>
@@ -27,7 +27,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.5.9 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.6.0 documentation</a> &#187;</li> 
       </ul>
     </div>  
 
@@ -38,6 +38,11 @@ <h3>Navigation</h3>
 
   <div class="section" id="matminer-changelog">
 <h1>matminer Changelog<a class="headerlink" href="#matminer-changelog" title="Permalink to this headline">¶</a></h1>
+<p><strong>v0.6.0</strong></p>
+<ul class="simple">
+<li><p>Ensure Yang omega is never NaN in YangSolidSolution featurizer (L. Ward)</p></li>
+<li><p>More complete BV sum table, some code cleanups (N. Wagner)</p></li>
+</ul>
 <p><strong>v0.5.9</strong></p>
 <ul class="simple">
 <li><p>add Meredig composition featurizer (A. Trewartha)</p></li>
@@ -457,7 +462,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.5.9 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.6.0 documentation</a> &#187;</li> 
       </ul>
     </div>
 

diff --git a/docs/contributors.html b/docs/contributors.html
@@ -4,7 +4,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml">
   <head>
     <meta charset="utf-8" />
-    <title>MatMiner Contributors &#8212; matminer 0.5.9 documentation</title>
+    <title>MatMiner Contributors &#8212; matminer 0.6.0 documentation</title>
     <link rel="stylesheet" href="_static/nature.css" type="text/css" />
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <script type="text/javascript" id="documentation_options" data-url_root="./" src="_static/documentation_options.js"></script>
@@ -27,7 +27,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.5.9 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.6.0 documentation</a> &#187;</li> 
       </ul>
     </div>  
 
@@ -142,7 +142,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.5.9 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.6.0 documentation</a> &#187;</li> 
       </ul>
     </div>
 

diff --git a/docs/dataset_addition_guide.html b/docs/dataset_addition_guide.html
@@ -4,7 +4,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml">
   <head>
     <meta charset="utf-8" />
-    <title>Guide to adding datasets to matminer &#8212; matminer 0.5.9 documentation</title>
+    <title>Guide to adding datasets to matminer &#8212; matminer 0.6.0 documentation</title>
     <link rel="stylesheet" href="_static/nature.css" type="text/css" />
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <script type="text/javascript" id="documentation_options" data-url_root="./" src="_static/documentation_options.js"></script>
@@ -27,7 +27,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.5.9 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.6.0 documentation</a> &#187;</li> 
       </ul>
     </div>  
 
@@ -328,7 +328,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.5.9 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.6.0 documentation</a> &#187;</li> 
       </ul>
     </div>
 

diff --git a/docs/dataset_summary.html b/docs/dataset_summary.html
@@ -4,7 +4,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml">
   <head>
     <meta charset="utf-8" />
-    <title>Datasets Available in Matminer &#8212; matminer 0.5.9 documentation</title>
+    <title>Datasets Available in Matminer &#8212; matminer 0.6.0 documentation</title>
     <link rel="stylesheet" href="_static/nature.css" type="text/css" />
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <script type="text/javascript" id="documentation_options" data-url_root="./" src="_static/documentation_options.js"></script>
@@ -27,7 +27,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.5.9 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.6.0 documentation</a> &#187;</li> 
       </ul>
     </div>  
 
@@ -1905,7 +1905,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.5.9 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.6.0 documentation</a> &#187;</li> 
       </ul>
     </div>
 

diff --git a/docs/example_bulkmod.html b/docs/example_bulkmod.html
@@ -4,7 +4,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml">
   <head>
     <meta charset="utf-8" />
-    <title>Predicting bulk moduli with matminer &#8212; matminer 0.5.9 documentation</title>
+    <title>Predicting bulk moduli with matminer &#8212; matminer 0.6.0 documentation</title>
     <link rel="stylesheet" href="_static/nature.css" type="text/css" />
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <script type="text/javascript" id="documentation_options" data-url_root="./" src="_static/documentation_options.js"></script>
@@ -27,7 +27,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.5.9 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.6.0 documentation</a> &#187;</li> 
       </ul>
     </div>  
 
@@ -358,7 +358,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.5.9 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.6.0 documentation</a> &#187;</li> 
       </ul>
     </div>
 

diff --git a/docs/featurizer_summary.html b/docs/featurizer_summary.html
@@ -4,7 +4,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml">
   <head>
     <meta charset="utf-8" />
-    <title>Table of Featurizers &#8212; matminer 0.5.9 documentation</title>
+    <title>Table of Featurizers &#8212; matminer 0.6.0 documentation</title>
     <link rel="stylesheet" href="_static/nature.css" type="text/css" />
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <script type="text/javascript" id="documentation_options" data-url_root="./" src="_static/documentation_options.js"></script>
@@ -27,7 +27,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.5.9 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.6.0 documentation</a> &#187;</li> 
       </ul>
     </div>  
 
@@ -501,7 +501,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.5.9 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.6.0 documentation</a> &#187;</li> 
       </ul>
     </div>
 

diff --git a/docs/genindex.html b/docs/genindex.html
@@ -5,7 +5,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml">
   <head>
     <meta charset="utf-8" />
-    <title>Index &#8212; matminer 0.5.9 documentation</title>
+    <title>Index &#8212; matminer 0.6.0 documentation</title>
     <link rel="stylesheet" href="_static/nature.css" type="text/css" />
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <script type="text/javascript" id="documentation_options" data-url_root="./" src="_static/documentation_options.js"></script>
@@ -28,7 +28,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.5.9 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.6.0 documentation</a> &#187;</li> 
       </ul>
     </div>  
 
@@ -353,6 +353,8 @@ <h2 id="B">B</h2>
 <h2 id="C">C</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
   <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="matminer.featurizers.html#matminer.featurizers.structure.GlobalInstabilityIndex.calc_bv_sum">calc_bv_sum() (matminer.featurizers.structure.GlobalInstabilityIndex method)</a>
+</li>
       <li><a href="matminer.featurizers.html#matminer.featurizers.structure.GlobalInstabilityIndex.calc_gii_iucr">calc_gii_iucr() (matminer.featurizers.structure.GlobalInstabilityIndex method)</a>
 </li>
       <li><a href="matminer.featurizers.html#matminer.featurizers.structure.GlobalInstabilityIndex.calc_gii_pymatgen">calc_gii_pymatgen() (matminer.featurizers.structure.GlobalInstabilityIndex method)</a>
@@ -1436,6 +1438,8 @@ <h2 id="I">I</h2>
   </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="matminer.featurizers.utils.html#matminer.featurizers.utils.grdf.initialize_pairwise_function">initialize_pairwise_function() (in module matminer.featurizers.utils.grdf)</a>
+</li>
+      <li><a href="matminer.utils.html#matminer.utils.data.IUCrBondValenceData.interpolate_soft_anions">interpolate_soft_anions() (matminer.utils.data.IUCrBondValenceData method)</a>
 </li>
       <li><a href="matminer.featurizers.utils.html#matminer.featurizers.utils.stats.PropertyStats.inverse_mean">inverse_mean() (matminer.featurizers.utils.stats.PropertyStats static method)</a>
 </li>
@@ -2556,7 +2560,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.5.9 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.6.0 documentation</a> &#187;</li> 
       </ul>
     </div>
 

diff --git a/docs/index.html b/docs/index.html
@@ -4,7 +4,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml">
   <head>
     <meta charset="utf-8" />
-    <title>matminer (Materials Data Mining) &#8212; matminer 0.5.9 documentation</title>
+    <title>matminer (Materials Data Mining) &#8212; matminer 0.6.0 documentation</title>
     <link rel="stylesheet" href="_static/nature.css" type="text/css" />
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <script type="text/javascript" id="documentation_options" data-url_root="./" src="_static/documentation_options.js"></script>
@@ -27,7 +27,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="#">matminer 0.5.9 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="#">matminer 0.6.0 documentation</a> &#187;</li> 
       </ul>
     </div>  
 
@@ -254,7 +254,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="#">matminer 0.5.9 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="#">matminer 0.6.0 documentation</a> &#187;</li> 
       </ul>
     </div>
 

diff --git a/docs/installation.html b/docs/installation.html
@@ -4,7 +4,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml">
   <head>
     <meta charset="utf-8" />
-    <title>Installing matminer &#8212; matminer 0.5.9 documentation</title>
+    <title>Installing matminer &#8212; matminer 0.6.0 documentation</title>
     <link rel="stylesheet" href="_static/nature.css" type="text/css" />
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <script type="text/javascript" id="documentation_options" data-url_root="./" src="_static/documentation_options.js"></script>
@@ -27,7 +27,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.5.9 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.6.0 documentation</a> &#187;</li> 
       </ul>
     </div>  
 
@@ -121,7 +121,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.5.9 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.6.0 documentation</a> &#187;</li> 
       </ul>
     </div>
 

diff --git a/docs/matminer.data_retrieval.html b/docs/matminer.data_retrieval.html
@@ -4,7 +4,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml">
   <head>
     <meta charset="utf-8" />
-    <title>matminer.data_retrieval package &#8212; matminer 0.5.9 documentation</title>
+    <title>matminer.data_retrieval package &#8212; matminer 0.6.0 documentation</title>
     <link rel="stylesheet" href="_static/nature.css" type="text/css" />
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <script type="text/javascript" id="documentation_options" data-url_root="./" src="_static/documentation_options.js"></script>
@@ -27,7 +27,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.5.9 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.6.0 documentation</a> &#187;</li> 
       </ul>
     </div>  
 
@@ -790,7 +790,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.5.9 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.6.0 documentation</a> &#187;</li> 
       </ul>
     </div>
 

diff --git a/docs/matminer.data_retrieval.tests.html b/docs/matminer.data_retrieval.tests.html
@@ -4,7 +4,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml">
   <head>
     <meta charset="utf-8" />
-    <title>matminer.data_retrieval.tests package &#8212; matminer 0.5.9 documentation</title>
+    <title>matminer.data_retrieval.tests package &#8212; matminer 0.6.0 documentation</title>
     <link rel="stylesheet" href="_static/nature.css" type="text/css" />
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <script type="text/javascript" id="documentation_options" data-url_root="./" src="_static/documentation_options.js"></script>
@@ -27,7 +27,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.5.9 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.6.0 documentation</a> &#187;</li> 
       </ul>
     </div>  
 
@@ -214,7 +214,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.5.9 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.6.0 documentation</a> &#187;</li> 
       </ul>
     </div>
 

diff --git a/docs/matminer.datasets.html b/docs/matminer.datasets.html
@@ -4,7 +4,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml">
   <head>
     <meta charset="utf-8" />
-    <title>matminer.datasets package &#8212; matminer 0.5.9 documentation</title>
+    <title>matminer.datasets package &#8212; matminer 0.6.0 documentation</title>
     <link rel="stylesheet" href="_static/nature.css" type="text/css" />
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <script type="text/javascript" id="documentation_options" data-url_root="./" src="_static/documentation_options.js"></script>
@@ -27,7 +27,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.5.9 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.6.0 documentation</a> &#187;</li> 
       </ul>
     </div>  
 
@@ -660,7 +660,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.5.9 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.6.0 documentation</a> &#187;</li> 
       </ul>
     </div>