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108 Open 130 Closed
108 Open 130 Closed
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Issues list

subnetwork flag to use network/subnet outside the project where dataflow runs in
#720 opened Feb 2, 2024 by bujiazhang
support for newer version than python 3.7
#719 opened Jun 4, 2023 by mizue31g
flatten null repeated column
#706 opened Nov 17, 2021 by dbaid
The MISSING_GENOTYPE_VALUE value of -1 can conflict with genotype values that are in a VCF (scalar vs. list)
#703 opened Oct 12, 2021 by adaykin
Network parameter not being read
#696 opened May 11, 2021 by abalter
27
move_hom_ref_calls python error
#695 opened Apr 29, 2021 by james-lawlor
1
Add an option to disable sharding
#679 opened Oct 1, 2020 by arostamianfar
Document how to use Dataflow Flexible Resource Scheduling to save on Cloud cost
#662 opened Sep 9, 2020 by mbookman
Add a flag to omit homozygous reference calls on vcf_to_bq import
#661 opened Sep 9, 2020 by mbookman
merge_header pipeline should not run when --representative_header_file is set
#658 opened Sep 8, 2020 by mbookman
vcf_to_bq running with --run_annotation_pipeline fails to find **_vep_output.vcf files
#655 opened Sep 8, 2020 by TomGardner
2
Add timestamps to the logging messages enhancement
#651 opened Aug 28, 2020 by samanvp
Move Avro related items out of bigquery_util.py internal cleanup
#644 opened Jul 18, 2020 by samanvp
Proper use of const values defined in vcf_header_io.py internal cleanup
#643 opened Jul 18, 2020 by samanvp
Sharding config with "Partition Range Start" enhancement
#641 opened Jul 9, 2020 by samanvp
Store VCF headers along with Avro files enhancement good first issue
#640 opened Jul 9, 2020 by samanvp
Modify bq_to_vcf integration tests to verify default 1-based coordinate enhancement
#637 opened Jul 9, 2020 by samanvp
Dataflow workers use private IP addresses enhancement
#630 opened Jun 30, 2020 by samanvp
@samanvp
3
Update Platinum dataset enhancement
#629 opened Jun 29, 2020 by samanvp
@samanvp
More rigorous integration tests for sample optimized tables internal cleanup
#617 opened Jun 17, 2020 by samanvp
@samanvp
pysam 0.16.0 halts with malformed VCF file good first issue P1
#613 opened Jun 11, 2020 by samanvp
@samanvp
Sample lookup optimized tables with --append flag good first issue internal cleanup
#607 opened Jun 1, 2020 by samanvp
Organize bigquery_utilmodule internal cleanup
#598 opened May 15, 2020 by samanvp
@samanvp
Do not add FORMAT in bq_to_vcf flow if there are no samples in the selected regions.
#592 opened May 4, 2020 by tneymanov
@tneymanov
Remove Base parser class for VT codebase.
#589 opened Apr 27, 2020 by tneymanov
@tneymanov
ProTip! Exclude everything labeled bug with -label:bug.