Draft attempt at ingestion using mapping file #24
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- Reads data into class then back out again, probably not very efficient. - Not tested with multiple rows of input data - Can't cope with multiple columns trying to set the same variable (need logic in mapping file for this)
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Backbone elements converted to full FHIR to be written out as *_dense. Add ID to Encounter resource
| codes = [old_dict[name + ".system"] + "|" + formatted_code] | ||
| else: | ||
| formatted_code = [ | ||
| c if isinstance(c, str) else str(int(c)) for c in raw_codes |
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This assumes that leading 0s in codes are not significant - is that true? (probably, but good to make sure, and document elsewhere)
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Oh, not sure about this - I don't think I've seen codes with leading 0's but that doesn't mean they don't exist
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@sadiekelly have you seen any codes starting with leading 0s?
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No, I haven't, none of the codes I've used so far begin with a zero. I've not been able to find anything that definitively says codes do not start with a zero, but it seems like a fair assumption to make from what we currently are using. I'll keep an eye out for any codes that do have leading zeros.
Reads data into class then back out again