GitHub

Script and files to reproduce the analysis presented in "Spring temperature shapes West Nile virus transmission in Europe" (https://doi.org/10.1016/j.actatropica.2020.105796).

Files:

-dataset_for_analysis: dataset for the analysis, with already merged WNV data and processed temperature covariates;

-tab_summerLST: dataset with summer temperature covariates (for "with summer LST" analysis);

-script_for_analysis: R code to carry out the analysis and make the plots;

-Europe_nuts: this folder contains the shapefiles (publicly available from Eurostat https://ec.europa.eu/eurostat/web/gisco/geodata/reference-data/administrative-units-statistical-units/nuts) to create the map of Europe;

-Marini WNV Europe: preprint of the study.

Original ECDC datasets were retrieved on Febrary 18, 2020 from the following URLs:

Name		Name	Last commit message	Last commit date
Latest commit History 12 Commits
Europe_nuts		Europe_nuts
.gitattributes		.gitattributes
Figure 1a.pdf		Figure 1a.pdf
Figure 1b.pdf		Figure 1b.pdf
Figure 1c.pdf		Figure 1c.pdf
Figure 2.pdf		Figure 2.pdf
Figure 2B.jpg		Figure 2B.jpg
Marini WNV Europe.pdf		Marini WNV Europe.pdf
README.md		README.md
Supmat Figure 1.jpg		Supmat Figure 1.jpg
Supmat Figure 2 a-b.jpg		Supmat Figure 2 a-b.jpg
Supmat Figure 2 c.jpg		Supmat Figure 2 c.jpg
Supmat Figure 3.jpg		Supmat Figure 3.jpg
all_models_supmat.txt		all_models_supmat.txt
dataset_for_analysis.txt		dataset_for_analysis.txt
script_for_analysis.R		script_for_analysis.R
tab_summerLST.txt		tab_summerLST.txt

giomarini/WNV_spring_Europe