Skip to content

Commit

Permalink
v2.2.1 (#492)
Browse files Browse the repository at this point in the history
  • Loading branch information
@schloerke
schloerke committed Feb 14, 2024
1 parent 85a4944 commit 9fdc7a8
Show file tree
Hide file tree
Showing 6 changed files with 811 additions and 647 deletions.
4 changes: 1 addition & 3 deletions DESCRIPTION
View file
@@ -1,5 +1,5 @@
Package: GGally
Version: 2.2.0.9000
Version: 2.2.1
License: GPL (>= 2.0)
Title: Extension to 'ggplot2'
Type: Package
Expand Down Expand Up @@ -76,6 +76,4 @@ SystemRequirements: openssl
Encoding: UTF-8
Language: en-US
RdMacros: lifecycle
Remotes:
tidyverse/ggplot2@rc/3.5.0
Config/testthat/edition: 3
2 changes: 1 addition & 1 deletion NEWS.md
View file
@@ -1,4 +1,4 @@
# GGally (development version)
# GGally 2.2.1

* Fix compatibility with ggplot2 3.5.0 (@teunbrand, #481)

Expand Down
57 changes: 11 additions & 46 deletions cran-comments.md
View file
@@ -1,55 +1,18 @@

## Comments
#### 2023-11-22
#### 2024-02-13

Thank you for being patient with me on my submission.

I have fixed the packageVersion issue by removing the unecessary code: https://github.com/ggobi/ggally/commit/9e7228c6d4219c515857426a982d1a5c1ff0cd13

The update also contains bug fixes and new datasets.

Please let me know if there is anything else I can do to help. Thank you again for your patience!!
I am updating GGally for support for the latest ggplot2 release.

Best,
Barret


#### 2023-11-07

Can you please change to "3.3"?

Please fix before 2023-11-21 to safely retain your package on CRAN.

Best
-k


#### 2023-07-18

[packageVersion() should only compare against strings.]

....

Please correct before 2023-08-16 to safely retain your package on CRAN.

....

Best
-k

**********************************

$GGally
$GGally$`GGally/R/gg-plots.R`
$GGally$`GGally/R/gg-plots.R`[[1]]
packageVersion("ggplot2") >= 3.3



## R CMD check results

* 0 errors | 0 warnings | 1 note

* checking CRAN incoming feasibility ... [11s] NOTE
Maintainer: ‘Barret Schloerke <schloerke@gmail.com>’

Found the following (possibly) invalid URLs:
Expand All @@ -63,15 +26,17 @@ When visiting the link manually, the link works as expected. I believe they have

## revdepcheck results

We checked 158 reverse dependencies (128 from CRAN + 30 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
We checked 159 reverse dependencies (128 from CRAN + 31 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.

* We saw 0 new problems
* We failed to check 3 packages
* We failed to check 5 packages

Issues with CRAN packages are summarised below.

### Failed to check
### Failed to check packages below due to installation compilation errors

* fingerPro (NA) - depends on rjags; Could not install rjags
* loon.ggplot (NA) - Trying to attached to a null device
* simmr (NA) - depends on rjags; Could not install rjags
* airGR
* fingerPro
* loon.ggplot
* robustbase
* simmr
100 changes: 52 additions & 48 deletions revdep/README.md
View file
Expand Up @@ -3,50 +3,53 @@
|field |value |
|:--------|:------------------------------|
|version |R version 4.3.0 (2023-04-21) |
|os |macOS 14.0 |
|os |macOS 14.2.1 |
|system |aarch64, darwin20 |
|ui |X11 |
|language |(EN) |
|collate |en_US.UTF-8 |
|ctype |en_US.UTF-8 |
|tz |America/New_York |
|date |2023-11-22 |
|date |2024-02-13 |
|pandoc |3.1 @ /opt/homebrew/bin/pandoc |

# Dependencies

|package |old |new |Δ |
|:-------|:-----|:-----|:--|
|GGally |2.1.2 |2.2.0 |* |
|GGally |2.2.0 |2.2.1 |* |

# Revdeps

## Failed to check (3)
## Failed to check (6)

|package |version |error |warning |note |
|:-----------|:---------|:-----|:-------|:----|
|[airGR](failures.md#airgr)|1.7.6 |1 | | |
|[fingerPro](failures.md#fingerpro)|1.1 |1 | | |
|[loon.ggplot](failures.md#loonggplot)|1.3.3 |1 | | |
|[pareg](failures.md#pareg)|1.6.0 |1 |1 |1 |
|[robustbase](failures.md#robustbase)|0.99-2 |1 | |1 |
|[simmr](failures.md#simmr)|0.5.1.216 |1 | | |

## All (158)
## All (159)

|package |version |error |warning |note |
|:------------------------|:---------|:-----|:-------|:----|
|[adventr](problems.md#adventr)|0.1.8 | |1 |2 |
|airGR |1.7.6 | | | |
|[airGR](failures.md#airgr)|1.7.6 |1 | | |
|[alevinQC](problems.md#alevinqc)|1.18.0 | | |2 |
|AlleleShift |1.1-2 | | | |
|AlpsNMR |4.4.0 | | | |
|[AntMAN](problems.md#antman)|1.1.0 | | |2 |
|BAS |1.6.4 | | | |
|[AlpsNMR](problems.md#alpsnmr)|4.4.0 | |1 | |
|[AntMAN](problems.md#antman)|1.1.0 | |1 |2 |
|BAS |1.7.1 | | | |
|[BasketballAnalyzeR](problems.md#basketballanalyzer)|0.5.0 | |1 |1 |
|[BindingSiteFinder](problems.md#bindingsitefinder)|2.0.0 | |1 | |
|[bootcluster](problems.md#bootcluster)|0.3.2 | | |1 |
|brinton |0.2.7 | | | |
|bruceR |2023.9 | | | |
|CARBayes |6.1 | | | |
|CARBayesST |4.0 | | | |
|[CARBayes](problems.md#carbayes)|6.1 | |1 | |
|[CARBayesST](problems.md#carbayesst)|4.0 | |1 | |
|cassowaryr |2.0.0 | | | |
|[CeTF](problems.md#cetf) |1.14.0 | | |1 |
|[CINNA](problems.md#cinna)|1.2.2 | | |1 |
Expand All @@ -58,7 +61,7 @@
|[conserveR](problems.md#conserver)|1.0.4 | | |2 |
|[corrViz](problems.md#corrviz)|0.1.0 | | |1 |
|counterfactuals |0.1.2 | | | |
|coveffectsplot |1.0.4 | | | |
|[coveffectsplot](problems.md#coveffectsplot)|1.0.5 | |1 | |
|[covsim](problems.md#covsim)|1.0.0 | | |1 |
|cubble |0.3.0 | | | |
|[cyanoFilter](problems.md#cyanofilter)|1.10.0 |1 | | |
Expand All @@ -67,19 +70,19 @@
|[descriptio](problems.md#descriptio)|1.2 | | |1 |
|discourseGT |1.2.0 | | | |
|ecostats |1.1.11 | | | |
|EGAnet |2.0.3 | | | |
|EMMIXmfa |2.0.11 | | | |
|EGAnet |2.0.4 | | | |
|EMMIXmfa |2.0.14 | | | |
|ezEDA |0.1.1 | | | |
|[fect](problems.md#fect) |1.0.0 | | |2 |
|[fic](problems.md#fic) |1.0.0 | | |1 |
|[finalfit](problems.md#finalfit)|1.0.7 | | |2 |
|[fingerPro](failures.md#fingerpro)|1.1 |1 | | |
|FPDclustering |2.2 | | | |
|[FPDclustering](problems.md#fpdclustering)|2.3.1 | |1 | |
|[fpp2](problems.md#fpp2) |2.5 | |1 | |
|[freqparcoord](problems.md#freqparcoord)|1.0.1 | |1 | |
|[gatom](problems.md#gatom)|1.0.0 |2 | |3 |
|[gatom](problems.md#gatom)|1.0.0 | | |2 |
|[GENESIS](problems.md#genesis)|2.32.0 | | |2 |
|[GeomxTools](problems.md#geomxtools)|3.5.0 |2 |2 |4 |
|[GeomxTools](problems.md#geomxtools)|3.6.2 |1 |1 |4 |
|[gfilmm](problems.md#gfilmm)|2.0.5 | | |1 |
|[ggbio](problems.md#ggbio)|1.50.0 |1 |3 |4 |
|[ggmcmc](problems.md#ggmcmc)|1.5.1.1 | |1 | |
Expand All @@ -88,90 +91,91 @@
|[GGPA](problems.md#ggpa) |1.14.0 | |1 |2 |
|[ggpcp](problems.md#ggpcp)|0.2.0 | | |1 |
|[ggpicrust2](problems.md#ggpicrust2)|1.7.3 |1 | | |
|[ggplot2.utils](problems.md#ggplot2utils)|0.3.0 | |1 | |
|[ggPMX](problems.md#ggpmx)|1.2.10 | | |2 |
|[ggquickeda](problems.md#ggquickeda)|0.3.0 | | |1 |
|[ggPMX](problems.md#ggpmx)|1.2.11 | | |2 |
|[ggquickeda](problems.md#ggquickeda)|0.3.1 | | |1 |
|[glancedata](problems.md#glancedata)|1.0.1 | | |1 |
|growthPheno |2.1.23 | | | |
|[gsynth](problems.md#gsynth)|1.2.1 | | |1 |
|hmer |1.5.6 | | | |
|[httk](problems.md#httk) |2.2.2 | | |1 |
|[ibawds](problems.md#ibawds)|0.5.0 | | |1 |
|[ICSClust](problems.md#icsclust)|0.1.0 | |1 | |
|[ICtest](problems.md#ictest)|0.3-5 | |1 | |
|imageData |0.1-62 | | | |
|[InflectSSP](problems.md#inflectssp)|1.6 | | |1 |
|innsight |0.2.0 | | | |
|innsight |0.3.0 | | | |
|iNZightRegression |1.3.3 | | | |
|ipsRdbs |0.2.6 | | | |
|[isomiRs](problems.md#isomirs)|1.30.0 | |1 |2 |
|ITNr |0.7.0 | | | |
|[ITNr](problems.md#itnr) |0.7.0 | |1 | |
|[jmv](problems.md#jmv) |2.4.11 | | |2 |
|jsmodule |1.4.3 | | | |
|jsmodule |1.4.4 | | | |
|[klovan](problems.md#klovan)|0.1.0 | | |1 |
|[loon.ggplot](failures.md#loonggplot)|1.3.3 |1 | | |
|[MAINT.Data](problems.md#maintdata)|2.7.1 | | |1 |
|[MAST](problems.md#mast) |1.28.0 |1 |2 |3 |
|[MAINT.Data](problems.md#maintdata)|2.7.1 | |1 |1 |
|[MAST](problems.md#mast) |1.28.0 |1 |2 |2 |
|[MCbiclust](problems.md#mcbiclust)|1.26.0 | | |1 |
|metan |1.18.0 | | | |
|metanetwork |0.7.0 | | | |
|[mgcViz](problems.md#mgcviz)|0.1.11 | |1 | |
|[miaSim](problems.md#miasim)|1.8.0 |1 |1 |1 |
|microeco |1.2.2 | | | |
|[miaSim](problems.md#miasim)|1.8.0 | |1 | |
|microeco |1.4.0 | | | |
|mitch |1.14.0 | | | |
|miWQS |0.4.4 | | | |
|mlergm |0.8 | | | |
|mlr3viz |0.6.1 | | | |
|[mlrMBO](problems.md#mlrmbo)|1.1.5.1 | |1 | |
|[MOFA2](problems.md#mofa2)|1.12.0 |2 | |4 |
|[mlergm](problems.md#mlergm)|0.8 | |1 | |
|mlr3viz |0.7.0 | | | |
|[mlrMBO](problems.md#mlrmbo)|1.1.5.1 |1 |1 | |
|[MOFA2](problems.md#mofa2)|1.12.1 |1 |1 |4 |
|MRPC |3.1.0 | | | |
|MSclust |1.0.3 | | | |
|mvMAPIT |2.0.3 | | | |
|[NetworkChange](problems.md#networkchange)|0.8 | |1 |1 |
|[NPflow](problems.md#npflow)|0.13.5 | |1 | |
|[nzelect](problems.md#nzelect)|0.4.0 | | |1 |
|OutliersO3 |0.6.3 | | | |
|ParamHelpers |1.14.1 | | | |
|[pareg](failures.md#pareg)|1.6.0 |1 |1 |1 |
|[PAsso](problems.md#passo)|0.1.10 | |1 | |
|[PhosR](problems.md#phosr)|1.12.0 | | |5 |
|[Pi](problems.md#pi) |2.14.0 | |2 | |
|[plotly](problems.md#plotly)|4.10.3 | |1 |1 |
|[PhosR](problems.md#phosr)|1.12.0 | | |4 |
|[Pi](problems.md#pi) |2.14.0 |1 | | |
|[plotly](problems.md#plotly)|4.10.4 | |1 |1 |
|[PopGenReport](problems.md#popgenreport)|3.1 | |1 | |
|PPforest |0.1.3 | | | |
|[protGear](problems.md#protgear)|1.6.0 | |1 |2 |
|psbcSpeedUp |2.0.4 | | | |
|psbcSpeedUp |2.0.5 | | | |
|psyntur |0.1.0 | | | |
|qualvar |0.2.0 | | | |
|QuantNorm |1.0.5 | | | |
|[randomForestExplainer](problems.md#randomforestexplainer)|0.10.1 | | |1 |
|rassta |1.0.5 | | | |
|[rbioacc](problems.md#rbioacc)|1.2-0 | | |1 |
|[RHMS](problems.md#rhms) |1.7 | |1 | |
|ridgetorus |1.0.2 | | | |
|[robCompositions](problems.md#robcompositions)|2.4.1 | |1 | |
|[robustbase](problems.md#robustbase)|0.99-0 | | |2 |
|[ridgetorus](problems.md#ridgetorus)|1.0.2 | |1 | |
|[robCompositions](problems.md#robcompositions)|2.4.1 | |1 |1 |
|[robustbase](failures.md#robustbase)|0.99-2 |1 | |1 |
|rosetta |0.3.12 | | | |
|[rrr](problems.md#rrr) |1.0.0 | | |1 |
|[rwty](problems.md#rwty) |1.0.2 | |1 | |
|[sageR](problems.md#sager)|0.6.1 | | |1 |
|[scPipe](problems.md#scpipe)|2.2.0 | |1 |6 |
|[scPipe](problems.md#scpipe)|2.2.0 | |1 |5 |
|seer |1.1.8 | | | |
|[SeqSQC](problems.md#seqsqc)|1.24.0 |1 | | |
|SHELF |1.9.0 | | | |
|SightabilityModel |1.5.5 | | | |
|[SimBIID](problems.md#simbiid)|0.2.1 | | |1 |
|[simmr](failures.md#simmr)|0.5.1.216 |1 | | |
|[SmartEDA](problems.md#smarteda)|0.3.9 | | |2 |
|[SmartEDA](problems.md#smarteda)|0.3.10 | | |2 |
|SpectralClMixed |1.0.1 | | | |
|[spinifex](problems.md#spinifex)|0.3.6 | | |1 |
|spinifex |0.3.7.0 | | | |
|[SPOTMisc](problems.md#spotmisc)|1.19.52 | | |1 |
|[spup](problems.md#spup) |1.3-2 | | |1 |
|spup |1.4-0 | | | |
|[staRdom](problems.md#stardom)|1.1.28 | |1 | |
|[statVisual](problems.md#statvisual)|1.2.1 | |1 |1 |
|[survstan](problems.md#survstan)|0.0.4 | | |2 |
|[survstan](problems.md#survstan)|0.0.6.1 | | |2 |
|[systemPipeTools](problems.md#systempipetools)|1.10.0 | |1 | |
|[tidybulk](problems.md#tidybulk)|1.14.2 | |2 |2 |
|[tidybulk](problems.md#tidybulk)|1.14.3 | |1 |2 |
|tidyCDISC |0.2.1 | | | |
|[tidyseurat](problems.md#tidyseurat)|0.7.4 |1 |1 |1 |
|[tidySingleCellExperiment](problems.md#tidysinglecellexperiment)|1.12.0 |1 |1 |3 |
|[tidyseurat](problems.md#tidyseurat)|0.8.0 | |1 | |
|[tidySingleCellExperiment](problems.md#tidysinglecellexperiment)|1.12.0 |1 |1 |2 |
|tip |0.1.0 | | | |
|[TNBC.CMS](problems.md#tnbccms)|1.18.0 | |1 | |
|[TOAST](problems.md#toast)|1.16.0 | |1 | |
Expand All @@ -182,7 +186,7 @@
|ufs |0.5.10 | | | |
|UNCOVER |1.1.0 | | | |
|[ushr](problems.md#ushr) |0.2.3 | |1 | |
|[velociraptor](problems.md#velociraptor)|1.12.0 |2 |1 |1 |
|[velociraptor](problems.md#velociraptor)|1.12.0 |2 |1 | |
|[vidger](problems.md#vidger)|1.22.0 | | |1 |
|vivid |0.2.8 | | | |
|vsp |0.1.1 | | | |
Expand Down
6 changes: 4 additions & 2 deletions revdep/cran.md
View file
@@ -1,14 +1,16 @@
## revdepcheck results

We checked 158 reverse dependencies (128 from CRAN + 30 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
We checked 159 reverse dependencies (128 from CRAN + 31 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.

* We saw 0 new problems
* We failed to check 3 packages
* We failed to check 5 packages

Issues with CRAN packages are summarised below.

### Failed to check

* airGR (NA)
* fingerPro (NA)
* loon.ggplot (NA)
* robustbase (NA)
* simmr (NA)

0 comments on commit 9fdc7a8

Please sign in to comment.