Workshop introduction to coalescent simulations
Notebook outline:
- Introduction to toytree + ipcoal
- Introduction to the coalescent.
- Introduction to the multi-species coalescent.
- what is Python, glue.
- jupyter and interactive.
- Coalescent simulations.
- What is the coalescent.
- Structured coalescent.
- Population demographic models.
- Species trees (MSC)
- We are going to learn 3 Python libraries:
- toytree
- ipcoal
- ipyrad.analysis
- Missing data in RAD-seq...