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Prepare release 2.0.0-beta1
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lukfor committed Dec 18, 2023
1 parent 4d0e7d8 commit bd08201
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2 changes: 1 addition & 1 deletion files/imputationserver-beagle.yaml
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id: imputationserver-beagle
name: Genotype Imputation supporting Beagle (Minimac4)
description: This is the new Michigan Imputation Server Pipeline using <a href="https://github.com/statgen/Minimac4">Minimac4</a>. Documentation can be found <a href="http://imputationserver.readthedocs.io/en/latest/">here</a>.<br><br>If your input data is <b>GRCh37/hg19</b> please ensure chromosomes are encoded without prefix (e.g. <b>20</b>).<br>If your input data is <b>GRCh38hg38</b> please ensure chromosomes are encoded with prefix 'chr' (e.g. <b>chr20</b>).
version: 1.8.0
version: 2.0.0-beta1
website: https://imputationserver.readthedocs.io
category:

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2 changes: 1 addition & 1 deletion files/imputationserver-hla.yaml
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id: imputationserver-hla
name: Genotype Imputation HLA (Minimac4)
description: This is the new Michigan Imputation Server Pipeline using <a href="https://github.com/statgen/Minimac4">Minimac4</a>. Documentation can be found <a href="http://imputationserver.readthedocs.io/en/latest/">here</a>.<br><br>If your input data is <b>GRCh37/hg19</b> please ensure chromosomes are encoded without prefix (e.g. <b>20</b>).<br>If your input data is <b>GRCh38hg38</b> please ensure chromosomes are encoded with prefix 'chr' (e.g. <b>chr20</b>).
version: 1.8.0
version: 2.0.0-beta1
website: https://imputationserver.readthedocs.io
category:

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2 changes: 1 addition & 1 deletion files/imputationserver-pgs.yaml
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Expand Up @@ -3,7 +3,7 @@ name: Polygenic Score Calculation
description: "You can upload genotyped data and the application imputes your genotypes, performs ancestry estimation and finally calculates Polygenic Risk Scores.<br><br>No dataset at hand? No problem, download our example dataset: <a href=\"https://imputationserver.sph.umich.edu/downloads/50-samples.zip\" class=\"btn btn-sm btn-secondary\" style=\"color:#ffffff !important\"><i class=\"fa fa-file\"></i> 50-samples.zip</a><br><br>"


version: 1.8.0
version: 2.0.0-beta1
website: https://imputationserver.readthedocs.io/en/latest/pgs/getting-started
category:

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2 changes: 1 addition & 1 deletion files/minimac4.yaml
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id: imputationserver
name: Genotype Imputation (Minimac4)
description: This is the new Michigan Imputation Server Pipeline using <a href="https://github.com/statgen/Minimac4">Minimac4</a>. Documentation can be found <a href="http://imputationserver.readthedocs.io/en/latest/">here</a>.<br><br>If your input data is <b>GRCh37/hg19</b> please ensure chromosomes are encoded without prefix (e.g. <b>20</b>).<br>If your input data is <b>GRCh38hg38</b> please ensure chromosomes are encoded with prefix 'chr' (e.g. <b>chr20</b>).
version: 1.8.0
version: 2.0.0-beta1
website: https://imputationserver.readthedocs.io
category:

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2 changes: 1 addition & 1 deletion pom.xml
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<groupId>genepi</groupId>
<artifactId>imputationserver</artifactId>
<version>1.8.0</version>
<version>2.0.0-beta1</version>
<packaging>jar</packaging>
<name>University of Michigan Imputation Server</name>
<url>http://maven.apache.org</url>
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public class ImputationPipeline {

public static final String PIPELINE_VERSION = "michigan-imputationserver-1.8.0";
public static final String PIPELINE_VERSION = "michigan-imputationserver-2.0.0-beta1";

public static final String IMPUTATION_VERSION = "minimac-v4.1.6";

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