CREMI Alignment

Introduction:

This repo contains tools to reverse the predictions of Synaptic Clefts on CREMI Benchmark datasets.

Requirements:

• You can use one of the following two commands to install the required packages:

conda install --yes --file requirements.txt
pip install -r requirements.txt

Usage:

python -a <volA-path> -b <volB-path> -c <volC-path> -thres <threshold_val>

The outputs can be converted to final submission volumes using this tool.