Analysis and Prediction of Complex Traits (EPI-880 Summer 2016)

Instructor: Gustavo de los Campos (gustavoc@msu.edu)

Class meets: M/W, 1:50-4:40pm, E111 Fee Hall.

Resources:

• Course Content
• Handout [MS word] [pdf]
• BGLR
• BGData
• pedigreeR
• PLINK

Slides:

• M1: Variable selection ppt pdf
• M2: Genome-Wide Association Studies (Yogasudha Veturi) pdf
• M3: Shrinkage estimation ppt pdf
• M4: Bayesian Methods ppt pdf
• M5: Semi-parametric regression using Kernel Methods ppt pdf
• M6: Bayesian Regularized Neural Networks ppt pdf

Homework

• HW1 (resampling)
• HW2 (combining GWAS and Ridge Regression)
• HW3 (Shrinkage Estimation: Ridge Regression Versus Bayesian)
• HW4 (Final project proposal)

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