Supplementary code for "Energy-based Modelling of the Feedback Control of Biomolecular Systems with Cyclic Flow Modulation"

This repository contains code for the examples in Gawthrop (2021) Available at

arXiv.

Notebooks

The nbviewer links will display the notebooks containing the code for each of the examples. These notebooks can be interactively run online using the Binder links.

Notebook	nbviewer	Binder	PDF
Cyclic Flow Modulation			PDF

Name		Name	Last commit message	Last commit date
Latest commit History 4 Commits
CFM.ipynb		CFM.ipynb
CFM.pdf		CFM.pdf
CFM_abg.fig		CFM_abg.fig
CFM_abg.py		CFM_abg.py
CFM_abg.svg		CFM_abg.svg
ECR_abg.fig		ECR_abg.fig
ECR_abg.py		ECR_abg.py
ECR_abg.svg		ECR_abg.svg
HEAD.tex		HEAD.tex
LICENSE		LICENSE
Make		Make
PI_PI_abg.fig		PI_PI_abg.fig
PI_abg.fig		PI_abg.fig
PI_abg.py		PI_abg.py
PI_abg.svg		PI_abg.svg
PIfb_abg.fig		PIfb_abg.fig
PIfb_abg.py		PIfb_abg.py
PIfb_abg.svg		PIfb_abg.svg
PIsl_abg.fig		PIsl_abg.fig
PIsl_abg.py		PIsl_abg.py
PIsl_abg.svg		PIsl_abg.svg
P_P_abg.fig		P_P_abg.fig
P_abg.fig		P_abg.fig
P_abg.py		P_abg.py
P_abg.svg		P_abg.svg
Path_abg.fig		Path_abg.fig
Path_abg.py		Path_abg.py
Path_abg.svg		Path_abg.svg
Pfb_abg.fig		Pfb_abg.fig
Pfb_abg.py		Pfb_abg.py
Pfb_abg.svg		Pfb_abg.svg
Psl_abg.fig		Psl_abg.fig
Psl_abg.py		Psl_abg.py
Psl_abg.svg		Psl_abg.svg
README.md		README.md
S_BGFB.dat		S_BGFB.dat
TAIL.tex		TAIL.tex
bgfb_abg.fig		bgfb_abg.fig
bgfb_abg.py		bgfb_abg.py
bgfb_abg.svg		bgfb_abg.svg
bgsl_abg.fig		bgsl_abg.fig
bgsl_abg.py		bgsl_abg.py
bgsl_abg.svg		bgsl_abg.svg
ecr_abg.fig		ecr_abg.fig
ecr_abg.py		ecr_abg.py
ecr_abg.svg		ecr_abg.svg
environment.yml		environment.yml
modularBondGraph.py		modularBondGraph.py
stoich.py		stoich.py
stoichBondGraph.py		stoichBondGraph.py
svgBondGraph.py		svgBondGraph.py

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gawthrop/Gaw21

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Supplementary code for "Energy-based Modelling of the Feedback Control of Biomolecular Systems with Cyclic Flow Modulation"

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