PEP8 fixes for PR #2331 (apptainer_run) by autopep8 #1837
Workflow file for this run
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| name: CI Push Testing | |
| on: | |
| pull_request_target: | |
| branches: [ develop ] | |
| jobs: | |
| approve: | |
| name: Approval | |
| if: ${{github.event.pull_request.head.repo.full_name != 'ganga-devs/ganga'}} | |
| runs-on: ubuntu-latest | |
| environment: | |
| name: Integrate Pull Request | |
| steps: | |
| - name: Approve | |
| run: echo For security reasons, all pull requests need to be approved first before running any automated CI. | |
| lint: | |
| name: Linting | |
| runs-on: ubuntu-latest | |
| needs: [approve] | |
| if: always() && !failure() && !cancelled() | |
| continue-on-error: true | |
| outputs: | |
| files_to_lint: ${{ steps.flake8.outputs.files_to_lint }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| ref: ${{ github.event.pull_request.head.sha }} | |
| fetch-depth: 0 | |
| - name: Set up Python 3.11 | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: 3.11 | |
| - name: Get changed files | |
| id: changed-files | |
| uses: tj-actions/changed-files@v41.0.0 | |
| with: | |
| base_sha: ${{ github.event.pull_request.head.sha }} | |
| - name: Install dependencies | |
| run: | | |
| python3 -m pip install --upgrade pip setuptools wheel | |
| python3 -m pip install flake8 | |
| - name: Setup flake8 annotations | |
| if: startsWith(github.head_ref, 'autopep8-patches') | |
| uses: rbialon/flake8-annotations@v1 | |
| - name: Lint with flake8 | |
| id: flake8 | |
| run: | | |
| files_to_lint="" | |
| count=0 | |
| for file in ${{ steps.changed-files.outputs.all_changed_files }}; do | |
| if [[ $file == *.py ]]; then | |
| linting_output=`flake8 --count --exit-zero $file` | |
| count=`echo "$linting_output" | tail -1` | |
| if [[ $count > 0 ]]; then | |
| files_to_lint="$files_to_lint $file" | |
| echo "$linting_output" | |
| fi | |
| fi | |
| done | |
| echo "files_to_lint=$files_to_lint" >> $GITHUB_OUTPUT | |
| - name: Fail on linting violations | |
| if: steps.flake8.outputs.files_to_lint != '' | |
| run: exit 1 | |
| autofix_pr: | |
| name: Create autopep8 PR | |
| if: always() && !failure() && !cancelled() && startsWith(github.head_ref, 'autopep8-patches') == false && needs.lint.outputs.files_to_lint != '' | |
| runs-on: ubuntu-latest | |
| needs: lint | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| ref: ${{ github.event.pull_request.head.sha }} | |
| - name: Run autopep8 | |
| id: autopep8 | |
| uses: peter-evans/autopep8@v2.0.0 | |
| with: | |
| args: --exit-code --recursive --in-place --aggressive --aggressive ${{ needs.lint.outputs.files_to_lint }} | |
| - name: Set autopep8 branch name | |
| id: vars | |
| run: | | |
| echo "branch-name=autopep8-patches/${{ github.head_ref }}" >> $GITHUB_OUTPUT | |
| PR_NUMBER=`echo ${{ github.event.pull_request.number }} | cut -f 1 -d '/'` | |
| echo "pr-number=$PR_NUMBER" >> $GITHUB_OUTPUT | |
| - name: Create Pull Request | |
| if: steps.autopep8.outputs.exit-code == 2 | |
| uses: peter-evans/create-pull-request@v5.0.2 | |
| with: | |
| commit-message: autopep8 action fixes | |
| title: "PEP8 fixes for PR #${{ github.event.pull_request.number }} (${{ github.head_ref }}) by autopep8" | |
| body: This is an auto-generated PR with fixes by autopep8 for the ${{ github.head_ref }} branch. | |
| labels: autopep8, automated pr | |
| branch: "autopep8-patches/${{ github.head_ref }}" | |
| base: ${{ github.base_ref }} | |
| token: ${{ secrets.WORKFLOW }} | |
| core-unit: | |
| name: GangaCore Unit | |
| needs: lint | |
| if: always() && !failure() && !cancelled() | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| ref: ${{ github.event.pull_request.head.sha }} | |
| fetch-depth: 0 | |
| - name: Set up Python 3.11 | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: 3.11 | |
| - name: Install dependencies | |
| run: | | |
| python -m venv ~/venv | |
| . ~/venv/bin/activate | |
| python -m pip install --upgrade pip setuptools wheel | |
| python -m pip install -e .[dev] | |
| - name: Test with pytest | |
| run: | | |
| . ~/venv/bin/activate | |
| python -m pytest --cov-report term-missing --cov ganga/GangaCore/Core --cov ganga/GangaCore/GPI --cov ganga/GangaCore/GPIDev --cov ganga/GangaCore/Lib --cov ganga/GangaCore/Runtime --cov ganga/GangaCore/PACKAGE.py --cov ganga/GangaCore/Utility --cov ganga/GangaCore/__init__.py ganga/GangaCore/test/Unit | |
| core-integration: | |
| name: GangaCore Integration | |
| needs: core-unit | |
| if: always() && !failure() && !cancelled() | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| ref: ${{ github.event.pull_request.head.sha }} | |
| fetch-depth: 0 | |
| - name: Set up Python 3.11 | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: 3.11 | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip setuptools wheel | |
| python -m pip install -e .[dev] | |
| - name: Test with pytest | |
| run: python -m pytest --cov-report term-missing --cov ganga/GangaCore/Core --cov ganga/GangaCore/GPI --cov ganga/GangaCore/GPIDev --cov ganga/GangaCore/Lib --cov ganga/GangaCore/Runtime --cov ganga/GangaCore/PACKAGE.py --cov ganga/GangaCore/Utility --cov ganga/GangaCore/__init__.py ganga/GangaCore/test/GPI | |
| condor: | |
| name: Condor | |
| needs: lint | |
| if: always() && !failure() && !cancelled() | |
| runs-on: ubuntu-latest | |
| container: htcondor/mini | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| ref: ${{ github.event.pull_request.head.sha }} | |
| - name: Set up Python 3 | |
| run: | | |
| dnf install -y python3.11 python3.11-pip | |
| /usr/bin/python3.11 -m venv venv | |
| source venv/bin/activate | |
| python -m pip install --upgrade pip setuptools wheel pytest | |
| - name: Install source | |
| run: | | |
| source venv/bin/activate | |
| python -m pip install -e .[dev] | |
| - name: Start Condor | |
| run: | | |
| /start.sh > start.stdout & | |
| sleep 30 | |
| condor_status | |
| - name: Test with pytest | |
| run: | | |
| source venv/bin/activate | |
| pwd | |
| find . -exec chown submituser:submituser {} \; | |
| su submituser -s $(pwd)/venv/bin/python -- -m pytest --cov-report term-missing --cov ganga/GangaCore/Lib/Condor ganga/GangaCore/test/Condor | |
| condor_status | |
| condor_q | |
| dirac-unit: | |
| name: GangaDirac Unit | |
| needs: lint | |
| if: always() && !failure() && !cancelled() | |
| runs-on: ubuntu-latest | |
| container: almalinux:9 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| ref: ${{ github.event.pull_request.head.sha }} | |
| - name: Set up | |
| run: | | |
| dnf install -y gcc which | |
| - name: Install Robot certificate | |
| env: # Or as an environment variable | |
| ROBOT_CERT: ${{ secrets.GangaRobot_UserCert }} | |
| ROBOT_KEY: ${{ secrets.GangaRobot_UserKey }} | |
| run: | | |
| mkdir ~/.globus | |
| echo "$ROBOT_CERT" > ~/.globus/usercert.pem | |
| echo "$ROBOT_KEY" > ~/.globus/userkey.pem | |
| chmod 644 ~/.globus/usercert.pem | |
| chmod 400 ~/.globus/userkey.pem | |
| - name: Install DIRAC UI | |
| run: | | |
| curl -LO https://github.com/DIRACGrid/DIRACOS2/releases/latest/download/DIRACOS-Linux-$(uname -m).sh | |
| bash DIRACOS-Linux-$(uname -m).sh | |
| source diracos/diracosrc | |
| python -m pip install DIRAC | |
| mkdir ~/.proxy | |
| DIRAC_PROXY_INIT=`which dirac-proxy-init` | |
| export PATH=~/.proxy:"$PATH" | |
| printf '#!/bin/sh\necho abcd | '"$DIRAC_PROXY_INIT"' -p $@ \n' > ~/.proxy/dirac-proxy-init | |
| chmod +x ~/.proxy/dirac-proxy-init | |
| dirac-proxy-init -x | |
| dirac-configure -F -S GridPP -C dips://dirac01.grid.hep.ph.ic.ac.uk:9135/Configuration/Server -I | |
| dirac-proxy-init -g gridpp_user -M | |
| - name: Install dependencies | |
| run: | | |
| source diracos/diracosrc | |
| python -m pip install --upgrade pip setuptools wheel | |
| python -m pip install -e .[dev,Dirac] | |
| - name: Test with pytest | |
| run: | | |
| source diracos/diracosrc | |
| export PATH=~/.proxy:"$PATH" | |
| python -m pytest --cov-report term-missing --cov ganga/GangaDirac ganga/GangaDirac/test/Unit | |
| dirac-integration: | |
| name: GangaDirac Integration | |
| needs: dirac-unit | |
| if: always() && !failure() && !cancelled() | |
| runs-on: ubuntu-latest | |
| container: almalinux:9 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| ref: ${{ github.event.pull_request.head.sha }} | |
| - name: Set up | |
| run: | | |
| dnf install -y gcc which | |
| - name: Install Robot certificate | |
| env: # Or as an environment variable | |
| ROBOT_CERT: ${{ secrets.GangaRobot_UserCert }} | |
| ROBOT_KEY: ${{ secrets.GangaRobot_UserKey }} | |
| run: | | |
| mkdir ~/.globus | |
| echo "$ROBOT_CERT" > ~/.globus/usercert.pem | |
| echo "$ROBOT_KEY" > ~/.globus/userkey.pem | |
| chmod 644 ~/.globus/usercert.pem | |
| chmod 400 ~/.globus/userkey.pem | |
| - name: Install DIRAC UI | |
| run: | | |
| curl -LO https://github.com/DIRACGrid/DIRACOS2/releases/latest/download/DIRACOS-Linux-$(uname -m).sh | |
| bash DIRACOS-Linux-$(uname -m).sh | |
| source diracos/diracosrc | |
| python -m pip install DIRAC | |
| mkdir ~/.proxy | |
| DIRAC_PROXY_INIT=`which dirac-proxy-init` | |
| export PATH=~/.proxy:"$PATH" | |
| printf '#!/bin/sh\necho abcd | '"$DIRAC_PROXY_INIT"' -p $@ \n' > ~/.proxy/dirac-proxy-init | |
| chmod +x ~/.proxy/dirac-proxy-init | |
| dirac-proxy-init -x | |
| dirac-configure -F -S GridPP -C dips://dirac01.grid.hep.ph.ic.ac.uk:9135/Configuration/Server -I | |
| dirac-proxy-init -g gridpp_user -M | |
| - name: Install gangarc file | |
| run: | | |
| echo -e "[DIRAC]\nDiracEnvSource = ~/diracos/diracosrc" > ~/.gangarc | |
| echo -e "[Configuration]\nRUNTIME_PATH=GangaDirac" >> ~/.gangarc | |
| echo -e "[defaults_DiracProxy]\ngroup=gridpp_user\nencodeDefaultProxyFileName=False" >> ~/.gangarc | |
| - name: Install dependencies | |
| run: | | |
| source diracos/diracosrc | |
| python -m pip install --upgrade pip setuptools wheel | |
| python -m pip install -e .[dev,Dirac] | |
| - name: Test with pytest | |
| env: | |
| GANGA_CONFIG_FILE: ~/.gangarc | |
| GANGA_CONFIG_PATH: GangaDirac/Dirac.ini | |
| DIRAC_DEPRECATED_FAIL: True | |
| run: | | |
| source diracos/diracosrc | |
| export PATH=~/.proxy:"$PATH" | |
| python -m pytest --cov-report term-missing --cov ganga/GangaDirac ganga/GangaDirac/test/GPI | |
| lhcb-unit: | |
| name: GangaLHCb Unit | |
| needs: lint | |
| if: always() && !failure() && !cancelled() | |
| runs-on: ubuntu-latest | |
| container: | |
| image: centos:7 | |
| options: --privileged | |
| steps: | |
| - name: Install CVM-FS | |
| run: | | |
| yum install -y https://ecsft.cern.ch/dist/cvmfs/cvmfs-release/cvmfs-release-latest.noarch.rpm | |
| yum install -y cvmfs cvmfs-config-default | |
| cvmfs_config setup | |
| echo "CVMFS_REPOSITORIES=lhcb.cern.ch,sft.cern.ch" > /etc/cvmfs/default.local | |
| echo "CVMFS_HTTP_PROXY=DIRECT" >> /etc/cvmfs/default.local | |
| mkdir -p /cvmfs/lhcb.cern.ch | |
| mkdir -p /cvmfs/sft.cern.ch | |
| mount -t cvmfs lhcb.cern.ch /cvmfs/lhcb.cern.ch | |
| mount -t cvmfs sft.cern.ch /cvmfs/sft.cern.ch | |
| - uses: actions/checkout@v2 | |
| with: | |
| ref: ${{ github.event.pull_request.head.sha }} | |
| - name: Install virtualenv and dependencies | |
| run: | | |
| /cvmfs/sft.cern.ch/lcg/releases/LCG_100/Python/3.8.6/x86_64-centos7-gcc9-opt/bin/python3 -m venv ~/venv | |
| . ~/venv/bin/activate | |
| yum install -y glibc-devel | |
| export CC=/cvmfs/sft.cern.ch/lcg/releases/gcc/7.3.0/x86_64-centos7/bin/gcc | |
| python3 -m pip install --upgrade pip setuptools wheel | |
| python3 -m pip install -e .[dev,LHCb,Dirac] | |
| - name: Test with pytest | |
| run: | | |
| . ~/venv/bin/activate | |
| python3 -m pytest --cov-report term-missing --cov ganga/GangaLHCb ganga/GangaLHCb/test/Unit | |
| lhcb-integration: | |
| name: GangaLHCb Integration | |
| needs: lhcb-unit | |
| if: always() && !failure() && !cancelled() | |
| runs-on: ubuntu-latest | |
| container: | |
| image: centos:7 | |
| options: --privileged | |
| steps: | |
| - name: Install git | |
| run: yum install -y git | |
| - name: Install CVM-FS | |
| run: | | |
| yum install -y https://ecsft.cern.ch/dist/cvmfs/cvmfs-release/cvmfs-release-latest.noarch.rpm | |
| yum install -y cvmfs cvmfs-config-default | |
| cvmfs_config setup | |
| echo "CVMFS_REPOSITORIES=lhcb.cern.ch,sft.cern.ch" > /etc/cvmfs/default.local | |
| echo "CVMFS_HTTP_PROXY=DIRECT" >> /etc/cvmfs/default.local | |
| mkdir -p /cvmfs/lhcb.cern.ch | |
| mkdir -p /cvmfs/sft.cern.ch | |
| mount -t cvmfs lhcb.cern.ch /cvmfs/lhcb.cern.ch | |
| mount -t cvmfs sft.cern.ch /cvmfs/sft.cern.ch | |
| - name: Install Robot certificate | |
| env: # Or as an environment variable | |
| ROBOT_CERT: ${{ secrets.GangaRobot_UserCert }} | |
| ROBOT_KEY: ${{ secrets.GangaRobot_UserKey }} | |
| run: | | |
| mkdir ~/.globus | |
| echo "$ROBOT_CERT" > ~/.globus/usercert.pem | |
| echo "$ROBOT_KEY" > ~/.globus/userkey.pem | |
| chmod 644 ~/.globus/usercert.pem | |
| chmod 400 ~/.globus/userkey.pem | |
| - uses: actions/checkout@v2 | |
| with: | |
| ref: ${{ github.event.pull_request.head.sha }} | |
| - name: Install virtualenv and dependencies | |
| run: | | |
| /cvmfs/sft.cern.ch/lcg/releases/LCG_100/Python/3.8.6/x86_64-centos7-gcc9-opt/bin/python3 -m venv ~/venv | |
| . ~/venv/bin/activate | |
| yum install -y glibc-devel | |
| export CC=/cvmfs/sft.cern.ch/lcg/releases/gcc/7.3.0/x86_64-centos7/bin/gcc | |
| python3 -m pip install --upgrade pip setuptools wheel | |
| python3 -m pip install -e .[dev,LHCb,Dirac] | |
| - name: Install gangarc file | |
| run: | | |
| echo -e "[Configuration]\nRUNTIME_PATH=GangaDirac:GangaGaudi:GangaLHCb" > ~/.gangarc | |
| - name: Test with pytest | |
| env: | |
| GANGA_CONFIG_PATH: GangaLHCb/LHCb.ini | |
| GANGA_CONFIG_FILE: ~/.gangarc | |
| run: | | |
| source /cvmfs/lhcb.cern.ch/lib/LbEnv 2>&1 | |
| echo abcd | lhcb-proxy-init -p | |
| . ~/venv/bin/activate | |
| python3 -m pytest --cov-report term-missing --cov ganga/GangaLHCb ganga/GangaLHCb/test/GPI |