Skip to content
View gamcil's full-sized avatar
78 followers · 9 following

Achievements

Achievement: YOLOAchievement: QuickdrawAchievement: Starstruckx2Achievement: Pull Sharkx2Achievement: Arctic Code Vault Contributor
BetaSend feedback

Achievements

Achievement: YOLOAchievement: QuickdrawAchievement: Starstruckx2Achievement: Pull Sharkx2Achievement: Arctic Code Vault Contributor
BetaSend feedback
Block or Report

Block or report gamcil

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
gamcil/README.md

Hi there 👋

  • 🔭 Currently a postdoc at the Steinegger Lab @ Seoul National University, South Korea (ex. Chooi Lab, The University of Western Australia)
  • 🌱 Interested in developing bioinformatics tools and interactive visualisations
  • 📫 Email: gamcil@snu.ac.kr

Some projects I've worked on:

  • clinker & clustermap.js, a pipeline for generating interactive visualisations of homologous gene clusters clinker demo
  • cblaster, a search tool for identifying homologous gene clusters in NCBI sequence databases
  • synthaser, a tool for automatically annotating & classifying domain architectures of multi-domain proteins
  • Protein structure visualisation in Foldseek, a protein structure search tool

If you want to support me:

Buy Me A Coffee

Pinned

  1. clinker clinker Public

    Gene cluster comparison figure generator

    Python 501 64

  2. cblaster cblaster Public

    Find clustered hits from a BLAST search

    HTML 82 20

  3. clustermap.js clustermap.js Public

    JavaScript 27 5

  4. synthaser synthaser Public

    Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases

    Python 15 3