Added few new functionalities to DIAMOND tool #5864
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bgruening
reviewed
Mar 14, 2024
| --out output.daa | ||
| #else if $output_section.output.outfmt == "101" | ||
| --outfmt '101' | ||
| $output_section.output.salltitles |
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Have you checked where those parameters have been moved to? I remember there are still in Diamond, but maybe in another section or another tool?
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Following functionalities are added to this PR
--swipePerforms exhaustive alignment against all database sequences--soft-maskingPerforms soft-masking using softmasking either of method (none=default, seg, tantan)--index-chunksMemory utilization functionality for number of chunks for index processing--file-buffer-sizeMemory utilization functionality for file buffer size in bytesAdded
--fastersensitivity modeUpdated and added additional query gencode options
Added few more tests for above added functionalities