Pinned

1. big-fish big-fish Public

   Toolbox for the analysis of smFISH images.

   Python 52 18

2. big-fish-examples big-fish-examples Public

   Notebooks to illustrate how BigFISH is working.

   Jupyter Notebook 13 8

3. fq-imjoy fq-imjoy Public

   ImJoy plugins to run different smFISH analysis in a user-friendly setting.

   HTML 2 1

4. fq-segmentation fq-segmentation Public

   Wrapper code for segmentation of cells and nuclei with Cellpose.

   Python 2 2

5. autofish autofish Public

   Python code to control automated iterative FISH system

   Python 1

6. sim-fish sim-fish Public

   Toolbox to simulate smFISH images.

   Python 7 1