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PubTator Dataset
Guoqian Jiang edited this page Apr 6, 2020
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14 revisions
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX fhir: <http://hl7.org/fhir/>
PREFIX pmc: <https://www.ncbi.nlm.nih.gov/pmc/articles#>
SELECT distinct ?pmc_id0 ?text0 ?pmc_id1 ?text1 (count(?text1) as ?count) WHERE {
?pmc pmc:annotations
[ pmc:id ?id0 ; pmc:text ?text0 ; pmc:infons
[ pmc:type ?type0 ; pmc:identifier ?pmc_id0 ] ] .
FILTER ((?type0 = 'Disease') && contains (lcase(str(?text0)), "diabetes")) .
{select * where{
?pmc pmc:annotations
[ pmc:id ?id1 ; pmc:text ?text1 ; pmc:infons
[ pmc:type ?type1 ; pmc:identifier ?pmc_id1 ] ] .
FILTER ((?type1="Gene")).
}
}
}Group by ?pmc_id0 ?text0 ?pmc_id1 ?text1 Order by DESC(?count)
Query took 3m 26s
pmc_id0 text0 pmc_id1 text1 count
1 MESH:D003920 diabetes 70008 ACE2 "729"^^xsd:integer
2 MESH:D003920 diabetes 3630 insulin "621"^^xsd:integer
3 MESH:D003920 diabetes 59272 ACE2 "611"^^xsd:integer
4 MESH:D003920 Diabetes 59272 ACE2 "186"^^xsd:integer
5 MESH:D003920 diabetes 3605 IL-17A "168"^^xsd:integer
6 MESH:D003920 diabetes 1803 DPP4 "151"^^xsd:integer
7 MESH:D003920 diabetes 1636 ACE "144"^^xsd:integer
8 MESH:D003920 diabetes 11491 ADAM17 "134"^^xsd:integer
9 MESH:D003920 diabetes 1803 DPP-4 "133"^^xsd:integer
10 MESH:D003920 diabetes 11421 ACE "124"^^xsd:integer
11 MESH:D003920 diabetes 1822 NOD "115"^^xsd:integer
12 MESH:D003920 diabetes 925 CD8 "104"^^xsd:integer
13 MESH:D003920 diabetes 11606 Ang II "91"^^xsd:integer
14 MESH:D003920 diabetes 3605 IL-17 "83"^^xsd:integer
15 MESH:D003920 diabetes 920 CD4 "79"^^xsd:integer
16 MESH:D003920 diabetes 302668 ACE2 "71"^^xsd:integer
17 MESH:D003920 diabetes mellitus 3630 insulin "69"^^xsd:integer
18 MESH:D003920 Diabetes 1636 ACE "65"^^xsd:integer
19 MESH:D003920 diabetes 1605 DAG "64"^^xsd:integer
20 MESH:D003924 type 2 diabetes 3630 insulin "59"^^xsd:integer
21 MESH:D003920 diabetes 2539 G6PD "56"^^xsd:integer
22 MESH:D003920 diabetes 64135 MDA5 "56"^^xsd:integer
23 MESH:D003920 diabetes 16171 IL-17A "51"^^xsd:integer
24 MESH:D003920 diabetes 15945 CXCL10 "50"^^xsd:integer
25 MESH:D003920 Diabetes 7057 TSP "50"^^xsd:integer
26 MESH:D003920 diabetes 183 Ang-II "49"^^xsd:integer
27 MESH:D003920 diabetes 12504 CD4 "45"^^xsd:integer
28 MESH:D003920 diabetes 5972 renin "44"^^xsd:integer
29 MESH:D003920 diabetes 305843 Ang "42"^^xsd:integer
30 MESH:D003920 Diabetes 3630 insulin "42"^^xsd:integer
31 MESH:D003920 diabetes 57314 Th1 "42"^^xsd:integer
32 MESH:D003920 diabetes 24310 ACE "41"^^xsd:integer
33 MESH:D003920 diabetes 284;285;51378;27329 Ang-(1-7 "41"^^xsd:integer
34 MESH:D003920 diabetes 3439 IFN "38"^^xsd:integer
35 MESH:D003920 Diabetes 59272 hACE2 "36"^^xsd:integer
36 MESH:D003924 type 2 diabetes 19016 PPARgamma "35"^^xsd:integer
37 MESH:D003920 diabetes 2740 GLP-1 "34"^^xsd:integer
38 MESH:D003920 diabetes 3458 IFNgamma "34"^^xsd:integer
39 MESH:D003920 diabetes 3569 IL-6 "34"^^xsd:integer
40 MESH:D003920 diabetes 64135 MDA-5 "34"^^xsd:integer
41 MESH:D003920 diabetes 64135 IFIH1 "33"^^xsd:integer
42 MESH:D003920 diabetes 24179 Ang II "32"^^xsd:integer
43 MESH:D003920 diabetes 3119 HLA "31"^^xsd:integer
44 MESH:D003920 diabetes 7124 TNFalpha "31"^^xsd:integer
45 MESH:D003920 diabetes 177 RAGE "30"^^xsd:integer
46 MESH:D003920 diabetes mellitus 3952 leptin "30"^^xsd:integer
47 MESH:D003922 autoimmune diabetes 3605 IL-17A "30"^^xsd:integer
48 MESH:D003920 diabetes 16153 IL-10 "29"^^xsd:integer
49 MESH:D003920 diabetes 15978 IFNgamma "28"^^xsd:integer
50 MESH:D003924 type 2 diabetes 1803 DPP-4 "28"^^xsd:integer
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX fhir: <http://hl7.org/fhir/>
PREFIX pmc: <https://www.ncbi.nlm.nih.gov/pmc/articles#>
SELECT distinct ?pmc_id0 ?text0 ?pmc_id1 ?text1 (count(?text1) as ?count) WHERE {
?pmc pmc:annotations
[ pmc:id ?id0 ; pmc:text ?text0 ; pmc:infons
[ pmc:type ?type0 ; pmc:identifier ?pmc_id0 ] ] .
FILTER ((?type0 = 'Disease') && contains (lcase(str(?text0)), "infection")) .
{select * where{
?pmc pmc:annotations
[ pmc:id ?id1 ; pmc:text ?text1 ; pmc:infons
[ pmc:type ?type1 ; pmc:identifier ?pmc_id1 ] ] .
FILTER ((?type1="Disease") && (contains (lcase(str(?text1)), "cancer") || contains (lcase(str(?text1)), "tumor"))).
}
}
}Group by ?pmc_id0 ?text0 ?pmc_id1 ?text1 Order by DESC(?count)
?pmc_id0 ?text0 ?pmc_id1 ?text1 ?count
MESH:D007239 infection MESH:D009369 cancer 1010
MESH:D007239 infection MESH:D009369 tumor 889
MESH:D007239 infection MESH:D009369 tumors 252
MESH:D014777 viral infection MESH:D009369 tumor 234
MESH:D007239 infection MESH:D009369 cancers 213
MESH:D014777 viral infection MESH:D009369 cancer 212
MESH:D014777 viral infections MESH:D009369 cancer 202
MESH:D014412 virus infection MESH:D009369 tumor 191
MESH:D014777 viral infections MESH:D009369 tumor 97
MESH:D014412 virus infection MESH:D009369 tumors 81
MESH:D007239 infection MESH:D009336 tumor necrosis 76
MESH:D014412 virus infection MESH:D009369 cancer 74
MESH:D015658 HIV infection MESH:D009369 cancer 74
MESH:D007239 HPV infection MESH:D009369 cancer 73
MESH:D007239 infections MESH:D009369 cancer 71
MESH:D014777 viral infection MESH:D009369 tumors 63
MESH:D007239 infection MESH:D011471 prostate cancer 62
MESH:D006526 HCV infection MESH:D009369 tumor 59
MESH:D007239 infection MESH:D001943 breast cancer 59
MESH:D007239 infection MESH:D052556 NPC tumors 59
MESH:D001424 bacterial infections MESH:D009369 cancer 52
MESH:D007239 infection MESH:D052556 NPC tumor 48
MESH:D014777 viral infections MESH:D009369 cancers 45
MESH:D007239 infection MESH:D008175 lung cancer 38
MESH:D006526 HCV infection MESH:D009369 cancer 37
MESH:D007251 influenza infection MESH:D009369 cancer 37
MESH:D006526 HCV infection MESH:D006528 liver cancer 34
MESH:D007239 HPV infections MESH:D009369 cancer 32
MESH:D014777 viral infection MESH:D009369 cancers 30
MESH:D012141 respiratory infections MESH:D009369 cancer 29
MESH:D015658 HIV-1 infection MESH:D009369 cancer 29
MESH:D001424 Bacterial infection MESH:D009369 metabolism Cancer 28
MESH:D001424 bacterial infection MESH:D009369 cancer 28
MESH:D045169 SARS infection MESH:D009369 cancer 28
MESH:D014777 viral infections MESH:D009369 tumors 27
MESH:D007239 infections MESH:D009369 tumor 26
MESH:D014412 virus infections MESH:D009369 cancer 26
MESH:D015658 HIV infection MESH:D009369 tumor 26
MESH:D009369 tumor infection MESH:D009369 tumor 25
MESH:D009521 NDV infection MESH:D009369 cancer 25
MESH:D001424 Bacterial infection MESH:D001943 Breast cancer 24
MESH:D007239 RSV infection MESH:D009369 cancer 24
MESH:D007239 infection MESH:D006528 liver cancer 23
MESH:D007239 infections MESH:D009369 cancers 22
MESH:D009369 infection and cancer MESH:D009369 infection and cancer 22
MESH:D007239 HCMV infection MESH:D009369 cancer 21
MESH:D012141 Respiratory viral infections MESH:D009369 cancer 21
MESH:D015658 HIV infection MESH:D009369 cancers 21
MESH:D006509 HBV infection MESH:D009369 tumor 20
MESH:C537372 KSHV infection MESH:D009369 cancer 19
MESH:D007239 FeLV infection MESH:D009369 tumors 19
MESH:D007239 HPV infection MESH:D009369 cancers 19
MESH:D007239 Malassezia infection MESH:D009369 tumor 19
MESH:D007239 infection MESH:D015179 colon cancer 19
MESH:D007251 influenza virus infection MESH:D009369 cancer 19
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX fhir: <http://hl7.org/fhir/>
PREFIX pmc: <https://www.ncbi.nlm.nih.gov/pmc/articles#>
SELECT distinct ?pmc_id0 ?text0 ?pmc_id1 ?text1 (count(?text1) as ?count) WHERE {
?pmc pmc:annotations
[ pmc:id ?id0 ; pmc:text ?text0 ; pmc:infons
[ pmc:type ?type0 ; pmc:identifier ?pmc_id0 ] ] .
FILTER ((?type0 = 'Disease') && !contains (lcase(str(?text0)), "diabetes")) .
{select * where{
?pmc pmc:annotations
[ pmc:id ?id1 ; pmc:text ?text1 ; pmc:infons
[ pmc:type ?type1 ; pmc:identifier ?pmc_id1 ] ] .
FILTER ((?type1="Disease") && contains (lcase(str(?text1)), "diabetes")).
}
}
}Group by ?pmc_id0 ?text0 ?pmc_id1 ?text1 Order by DESC(?count)
?pmc_id0 ?text0 ?pmc_id1 ?text1 ?count
MESH:D006973 hypertension MESH:D003920 diabetes 701
MESH:D003920 diabetic MESH:D003920 diabetes 554
MESH:D007239 infection MESH:D003920 diabetes 511
MESH:D009765 obesity MESH:D003920 diabetes 477
MESH:D003704 dementia MESH:D003920 diabetes 397
MESH:D009369 cancer MESH:D003920 diabetes 296
MESH:D007249 inflammation MESH:D003920 diabetes 286
MESH:D002318 cardiovascular disease MESH:D003920 diabetes 216
MESH:D020521 stroke MESH:D003920 diabetes 196
MESH:D003643 death MESH:D003920 diabetes 183
MESH:D001249 asthma MESH:D003920 diabetes 163
MESH:D006973 hypertension MESH:D003920 diabetes mellitus 163
MESH:D003928 diabetic nephropathy MESH:D003920 diabetes 157
MESH:D017202 Ischemic heart disease MESH:D003920 Diabetes mellitus 154
MESH:D006331 heart disease MESH:D003920 diabetes 131
MESH:D002318 cardiovascular diseases MESH:D003920 diabetes 130
MESH:D000013 Congenital anomalies MESH:D003920 Diabetes mellitus 117
MESH:D002561 Cerebrovascular disease MESH:D003920 Diabetes mellitus 117
MESH:D011014 pneumonia MESH:D003920 diabetes 117
MESH:D047928 Preterm birth complications MESH:D003920 Diabetes mellitus 117
MESH:D006943 hyperglycemia MESH:D003920 diabetes 108
MESH:D000419 albuminuria MESH:D003920 diabetes 104
MESH:D001327 autoimmunity MESH:D003920 diabetes 104
MESH:D002561 cerebrovascular disease MESH:D003920 diabetes 103
MESH:D017116 Low back pain MESH:D003920 Diabetes mellitus 103
MESH:D008288 malaria MESH:D003920 diabetes 98
MESH:D005334 fever MESH:D003920 diabetes 96
MESH:D003704 dementia MESH:D003924 type 2 diabetes 95
MESH:D009765 obese MESH:D003920 diabetes 89
MESH:D007239 infection MESH:D003920 diabetes mellitus 84
MESH:D002908 chronic diseases MESH:D003920 diabetes 83
MESH:D051436 chronic kidney disease MESH:D003920 diabetes 77
MESH:D000163 AIDS MESH:D003920 diabetes 76
MESH:D012141 respiratory infections MESH:D003920 Diabetes mellitus 75
MESH:D002908 chronic disease MESH:D003920 diabetes 74
MESH:D050197 atherosclerosis MESH:D003920 diabetes 74
MESH:D018352 MERS-CoV infection MESH:D003920 diabetes 72
MESH:D007674 kidney disease MESH:D003920 diabetes 71
MESH:D009103 multiple sclerosis MESH:D003920 diabetes 69
MESH:D005334 fever MESH:D003920 diabetes mellitus 67
MESH:D009369 tumor MESH:D003920 diabetes 65
MESH:D003866 depressive disorder MESH:D003920 Diabetes mellitus 63
MESH:D006973 Hypertension MESH:D003920 Diabetes 63
MESH:D001172 rheumatoid arthritis MESH:D003920 diabetes 62
MESH:D014777 viral infection MESH:D003920 diabetes 61
MESH:D006331 heart diseases MESH:D003920 diabetes 60
MESH:D009203 myocardial infarction MESH:D003920 diabetes 60
MESH:D018805 sepsis MESH:D003920 diabetes 60
MESH:D001327 autoimmune diseases MESH:D003920 diabetes 59
MESH:D015658 HIV MESH:D003920 diabetes 59
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX fhir: <http://hl7.org/fhir/>
PREFIX pmc: <https://www.ncbi.nlm.nih.gov/pmc/articles#>
select distinct ?pmc_type ?pmc_identifier ?text (count(?text) as ?count) where {
?pmc pmc:annotations ?annotations .
?annotations pmc:infons ?pmc_infons .
?pmc_infons pmc:identifier ?pmc_identifier .
?pmc_infons pmc:type ?pmc_type .
?annotations pmc:text ?text .
FILTER (?pmc_type='Disease').
} group by ?pmc_type ?pmc_identifier ?text order by DESC(?count)
?pmc_type ?pmc_identifier ?text ?count
Disease MESH:D007239 infection 99440
Disease MESH:D011014 pneumonia 17319
Disease MESH:D009369 cancer 14801
Disease MESH:D009369 tumor 14370
Disease MESH:D007249 inflammation 13101
Disease MESH:D001249 asthma 11206
Disease MESH:D005334 fever 10392
Disease MESH:D014777 viral infection 9773
Disease MESH:D012131 respiratory syndrome 7969
Disease MESH:D003967 diarrhea 7553
Disease MESH:D003141 infectious diseases 6781
Disease MESH:D003643 death 6594
Disease MESH:D008288 malaria 6210
Disease MESH:D014412 virus infection 6006
Disease MESH:D000163 AIDS 5023
Disease MESH:D012141 respiratory infections 4928
Disease MESH:D014777 viral infections 4729
Disease MESH:D064420 toxicity 4322
Disease MESH:D018805 sepsis 3962
Disease MESH:D012131 respiratory disease 3887
Disease MESH:D045169 acute respiratory syndrome 3812
Disease MESH:D064420 cytotoxicity 3536
Disease MESH:D003920 diabetes 3519
Disease MESH:C536528 LPS 3453
Disease MESH:D004660 encephalitis 3183
Disease MESH:D003711 demyelination 3117
Disease MESH:D012141 respiratory tract infections 3106
Disease MESH:D012131 respiratory illness 2934
Disease MESH:D018352 MERS-CoV infection 2931
Disease MESH:D007251 influenza infection 2921
Disease MESH:D003141 infectious disease 2841
Disease MESH:D009369 tumors 2834
Disease MESH:D001988 bronchiolitis 2793
Disease MESH:D012131 respiratory syndrome coronavirus 2760
Disease MESH:D015431 weight loss 2695
Disease MESH:D009103 multiple sclerosis 2694
Disease MESH:D012141 respiratory infection 2626
Disease MESH:D007251 influenza virus infection 2556
Disease MESH:D003371 cough 2337
Disease MESH:D001943 breast cancer 2308
Disease MESH:D006973 hypertension 2191
Disease MESH:D014376 tuberculosis 2183
Disease MESH:D015658 HIV infection 2127
Disease MESH:D015658 HIV-1 infection 2107
Disease MESH:C537014 KD 2056
Disease MESH:D007239 RSV infection 2048
Disease MESH:D015658 HIV 2040
Disease MESH:D005355 fibrosis 1963
Disease MESH:D014766 viremia 1952
Disease MESH:D012141 respiratory tract infection 1948
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX fhir: <http://hl7.org/fhir/>
PREFIX pmc: <https://www.ncbi.nlm.nih.gov/pmc/articles#>
select distinct ?pmc_type ?pmc_identifier ?text (count(?text) as ?count) where {
?pmc pmc:annotations ?annotations .
?annotations pmc:infons ?pmc_infons .
?pmc_infons pmc:identifier ?pmc_identifier .
?pmc_infons pmc:type ?pmc_type .
?annotations pmc:text ?text .
FILTER (?pmc_type='Gene').
} group by ?pmc_type ?pmc_identifier ?text order by DESC(?count)
?pmc_type ?pmc_identifier ?text ?count
Gene "3439" IFN 21720
Gene "925" CD8 18219
Gene "920" CD4 13508
Gene "12504" CD4 8876
Gene "56925" muM 8236
Gene "23586" RIG-I 8218
Gene "3458" IFN-gamma 6603
Gene "4790" NF-kappaB 6067
Gene "10410" IFITM3 5890
Gene "15978" IFN-gamma 5643
Gene "6301" SARS 4982
Gene "59272" ACE2 4738
Gene "3586" IL-10 4329
Gene "3569" IL-6 4321
Gene "9636" ISG15 4238
Gene "7124" TNF-alpha 4232
Gene "3439" interferon 4104
Gene "260431" COPD 3628
Gene "70008" ACE2 3605
Gene "3456" IFN-beta 3517
Gene "16153" IL-10 3475
Gene "3439" IFN-alpha 3447
Gene "57506" MAVS 3444
Gene "21898" LPS 3379
Gene "5610" PKR 3326
Gene "3661" IRF3 3213
Gene "6772" STAT1 3211
Gene "30835" DC-SIGN 2964
Gene "155030" Gag 2747
Gene "1803" DPP4 2700
Gene "64135" MDA5 2692
Gene "220972" miR 2645
Gene "7157" p53 2467
Gene "3553" IL-1beta 2398
Gene "3845" NS3 2293
Gene "2597" GAPDH 2286
Gene "16193" IL-6 2261
Gene "3576" IL-8 2236
Gene "21926" TNF-alpha 2201
Gene "3700" gp120 2190
Gene "83939" eIF2alpha 2178
Gene "100616444" Env 2140
Gene "1401" CRP 2136
Gene "10045" nsp1 2082
Gene "72935" mAbs 2041
Gene "164045" helicase 2030
Gene "16059" IgG 1998
Gene "3630" insulin 1984
Gene "3107" MHC 1975
Gene "8519" IFITM1 1939
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX fhir: <http://hl7.org/fhir/>
PREFIX pmc: <https://www.ncbi.nlm.nih.gov/pmc/articles#>
select distinct ?pmc_type ?pmc_identifier ?text (count(?text) as ?count) where {
?pmc pmc:annotations ?annotations .
?annotations pmc:infons ?pmc_infons .
?pmc_infons pmc:identifier ?pmc_identifier .
?pmc_infons pmc:type ?pmc_type .
?annotations pmc:text ?text .
FILTER (?pmc_type='Mutation').
} group by ?pmc_type ?pmc_identifier ?text order by DESC(?count)
?pmc_type ?pmc_identifier ?text ?count
Mutation rs12252 rs12252 520
Mutation p.N214A N214A 171
Mutation p.H275Y H275Y 169
Mutation rs12979860 rs12979860 167
Mutation rs763926088 G1670A 158
Mutation rs4804803 rs4804803 154
Mutation p.H74L H74L 132
Mutation rs1469321633 M90T 131
Mutation rs34481144 rs34481144 131
Mutation p.G64S G64S 130
Mutation p.M250K M250K 116
Mutation p.N63Y N63Y 113
Mutation p.S31N S31N 101
Mutation p.I529T I529T 99
Mutation p.H274Y H274Y 90
Mutation c.del32 Delta32 88
Mutation p.A372V A372V 86
Mutation p.M1058L M1058L 86
Mutation p.D222G D222G 84
Mutation rs8099917 rs8099917 84
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX fhir: <http://hl7.org/fhir/>
PREFIX pmc: <https://www.ncbi.nlm.nih.gov/pmc/articles#>
select distinct ?pmc_type ?pmc_identifier ?text (count(?text) as ?count) where {
?pmc pmc:annotations ?annotations .
?annotations pmc:infons ?pmc_infons .
?pmc_infons pmc:identifier ?pmc_identifier .
?pmc_infons pmc:type ?pmc_type .
?annotations pmc:text ?text .
FILTER (?pmc_type='Chemical').
} group by ?pmc_type ?pmc_identifier ?text order by DESC(?count)
?pmc_type ?pmc_identifier ?text ?count
Chemical MESH:D009584 N 16732
Chemical MESH:C032259 SDS 6791
Chemical MESH:D010100 oxygen 5529
Chemical MESH:D002784 cholesterol 5022
Chemical MESH:D012965 NaCl 4497
Chemical MESH:D002245 CO2 4326
Chemical MESH:D004121 DMSO 4031
Chemical MESH:D000255 ATP 3818
Chemical MESH:D012254 ribavirin 3765
Chemical MESH:D005947 glucose 3624
Chemical MESH:D006859 "1H" 3578
Chemical MESH:D003545 cysteine 3564
Chemical MESH:C045260 PFU 3335
Chemical MESH:D010710 phosphate 3269
Chemical MESH:D002118 calcium 3193
Chemical MESH:D006859 hydrogen 2994
Chemical MESH:D006859 "2H" 2985
Chemical MESH:D004492 EDTA 2934
Chemical MESH:D016650 FITC 2914
Chemical MESH:C047902 serine 2894
Chemical MESH:D053139 oseltamivir 2875
Chemical MESH:D000431 ethanol 2824
Chemical MESH:D012794 sialic acid 2428
Chemical MESH:D010406 penicillin 2383
Chemical MESH:D004220 disulfide 2310
Chemical MESH:D008358 mannose 2085
Chemical MESH:D013395 sucrose 2045
Chemical MESH:C530429 Ser 1994
Chemical MESH:D013307 streptomycin 1984
Chemical MESH:D000431 alcohol 1981
Chemical MESH:D002118 Ca2+ 1952
Chemical MESH:D002241 carbohydrate 1929
Chemical MESH:C103208 CH 1871
Chemical MESH:D009569 nitric oxide 1862
Chemical MESH:D009584 nitrogen 1816
Chemical MESH:D002244 C 1762
Chemical MESH:C114808 lysine 1680
Chemical MESH:D002738 chloroquine 1673
Chemical MESH:C003043 paraformaldehyde 1659
Chemical MESH:D002244 carbon 1649
Chemical MESH:D000432 methanol 1617
Chemical MESH:D005557 formalin 1568
Chemical MESH:D012834 silver 1568
Chemical MESH:D009705 nucleoside 1566
Chemical MESH:D015636 MgCl2 1539
Chemical MESH:C513342 "13C" 1522
Chemical MESH:D001127 arginine 1520
Chemical MESH:C014843 Tris-HCl 1508
Chemical MESH:D000409 alanine 1467
Chemical MESH:D013256 steroid 1466PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX fhir: <http://hl7.org/fhir/>
PREFIX pmc: <https://www.ncbi.nlm.nih.gov/pmc/articles#>
select distinct ?pmc_type ?text (count(?text) as ?count) where {
?pmc pmc:annotations ?annotations .
?annotations pmc:infons ?pmc_infons .
?pmc_infons pmc:type ?pmc_type .
?annotations pmc:text ?text .
FILTER (?pmc_type='Species').
} group by ?pmc_type ?text order by DESC(?count)
?pmc_type ?pmc_identifier ?text ?count
Species "9606" human 131742
Species "9606" patients 111820
Species "10090" mice 96048
Species "9606" children 41417
Species "10090" mouse 36978
Species "11320" influenza 34613
Species "1335626" MERS-CoV 34315
Species "9606" patient 29753
Species "114727" H1N1 27104
Species "11676" HIV-1 26425
Species "9606" humans 25508
Species "11309" influenza 24222
Species "12814" respiratory 24011
Species "28295" PEDV 17459
Species "11309" influenza virus 17119
Species "9606" Human 16357
Species "11103" HCV 15730
Species "9823" pigs 13721
Species "1335626" MERS 12818
Species "9606" people 12796
Species "227859" SARS-CoV 12684
Species "11520" influenza 12409
Species "102793" H5N1 12326
Species "9606" participants 11982
Species "9606" mammalian 11908
Species "9685" cats 11796
Species "64320" ZIKV 11012
Species "1570291" EBOV 10639
Species "1570291" Ebola 10425
Species "9823" swine 10267PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX fhir: <http://hl7.org/fhir/>
PREFIX pmc: <https://www.ncbi.nlm.nih.gov/pmc/articles#>
select distinct ?pmc_type ?pmc_identifier ?text (count(?text) as ?count) where {
?pmc pmc:annotations ?annotations .
?annotations pmc:infons ?pmc_infons .
?pmc_infons pmc:identifier ?pmc_identifier .
?pmc_infons pmc:type ?pmc_type .
?annotations pmc:text ?text .
FILTER (?pmc_type='Species').
} group by ?pmc_type ?pmc_identifier ?text order by DESC(?count)
?pmc_type ?count
Species 2030458
Gene 1235829
Disease 1036954
Chemical 778872
CellLine 76816
Mutation 33413
Strain 26573