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FHCRC Computational Biology

Popular repositories

  1. seqmagick seqmagick Public

    An imagemagick-like frontend to Biopython SeqIO

    Python 108 22

  2. nestly nestly Public

    Make and use nested directory trees corresponding to combinatorial choices of parameters

    Python 21 2

  3. taxtastic taxtastic Public

    Create and maintain phylogenetic "reference packages" of biological sequences.

    Python 20 9

  4. ampliconnoise ampliconnoise Public

    A python front end for Chris Quince's AmpliconNoise c code

    C 6

  5. mcl mcl Public

    Graph clustering by flow simulation

    C 6

  6. microbiome-demo microbiome-demo Public

    Demonstration files and scripts for our high-throughput sequencing analysis pipeline

    Shell 5

Repositories

Showing 10 of 12 repositories
  • taxtastic Public

    Create and maintain phylogenetic "reference packages" of biological sequences.

    Python 20 GPL-3.0 9 6 1 Updated Apr 5, 2024
  • seqmagick Public

    An imagemagick-like frontend to Biopython SeqIO

    Python 108 GPL-3.0 22 15 1 Updated Mar 18, 2024
  • deenurp Public

    16S rRNA gene sequence curation and phylogenetic reference set creation

    Python 4 GPL-3.0 3 20 3 Updated Oct 26, 2023
  • yapp Public

    Yet another pplacer pipeline

    Python 0 0 4 2 Updated Sep 27, 2023
  • nestly Public

    Make and use nested directory trees corresponding to combinatorial choices of parameters

    Python 21 MIT 2 5 0 Updated Apr 23, 2017
  • ampliconnoise Public

    A python front end for Chris Quince's AmpliconNoise c code

    C 6 GPL-3.0 0 1 0 Updated Jul 2, 2015
  • biopy Public

    Automatically exported from code.google.com/p/biopy

    Python 1 0 0 0 Updated Mar 14, 2015
  • prepdrm Public

    Analysis pipeline for identifying low frequency drug resistance mutations (DRMs) in samples from the Partners PrEP study

    C 0 GPL-3.0 0 0 0 Updated Jun 30, 2014
  • mutgen Public

    Generate mutations under a motif based mutation model

    Python 2 GPL-3.0 0 0 0 Updated Jun 19, 2014
  • mcl Public

    Graph clustering by flow simulation

    C 6 0 0 0 Updated May 12, 2014

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