Read ChemDraw CDX and other formats embedded in DOCX files
Don't use this CDX parser, it's unreliable. I have reimplemented it for fun, this is a 'note to self' repo.
Launch obabel -i cdx 'file.cdx' -o sdf instead, for the time being CDX functionality does not work with Python bindings, only binary obabel does the job.
Requirements:
- Python 3
- kaitaistruct 0.8
- olefile 0.45
- openbabel 2.3
See setup.sh for install commands.
Example:
from docx_cdx.parse_mols_from_docx import read_mols_from_docx
mols = read_mols_from_docx('/home/user/file.docx')
for mol in mols:
# will print MDL MOL strings of all the molecules in the docx file
print(mol)