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| ^.*\.Rproj$ | ||
| ^\.Rproj\.user$ | ||
| ^old_files* | ||
| ^\.gitignore$ | ||
| ^.DS_Store | ||
| ^src/.DS_Store | ||
| ^.git |
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| # History files | ||
| .Rproj.user | ||
| .Rhistory | ||
| .Rapp.history | ||
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| # Session Data files | ||
| .RData | ||
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| # User-specific files | ||
| .Ruserdata | ||
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| # Example code in package build process | ||
| *-Ex.R | ||
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| # Output files from R CMD build | ||
| /*.tar.gz | ||
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| # Output files from R CMD check | ||
| /*.Rcheck/ | ||
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| # RStudio files | ||
| .Rproj.user/ | ||
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| # produced vignettes | ||
| vignettes/*.html | ||
| vignettes/*.pdf | ||
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| # OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3 | ||
| .httr-oauth | ||
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| # knitr and R markdown default cache directories | ||
| *_cache/ | ||
| /cache/ | ||
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| # Temporary files created by R markdown | ||
| *.utf8.md | ||
| *.knit.md | ||
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| # R Environment Variables | ||
| .Renviron |
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| Package: c060 | ||
| Version: 0.2-6 | ||
| Date: 2021-02-27 | ||
| Author: Martin Sill, Thomas Hielscher, Manuela Zucknick, Natalia Becker. | ||
| Maintainer: Frederic Bertrand <frederic.bertrand@utt.fr> | ||
| Title: Extended Inference for Lasso and Elastic-Net Regularized Cox and | ||
| Generalized Linear Models | ||
| Depends: | ||
| Imports: glmnet, survival, parallel, mlegp, tgp, peperr, penalizedSVM, | ||
| lattice | ||
| Suggests: | ||
| Description: The c060 package provides additional functions to perform stability selection, model validation and parameter tuning for glmnet models. | ||
| License: GPL-2 | ||
| LazyLoad: yes | ||
| NeedsCompilation: no |
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| 3b1a03fcb51c4f98fe6f79e20f169979 *DESCRIPTION | ||
| 8723f691e371abaebe8e5b4089be3975 *NAMESPACE | ||
| 14e7421de46ec2d51f97547613958eca *R/EPSGO.R | ||
| b1e7b5d4f74093c73f58e5413058994e *R/auc.R | ||
| 4ca09c9e7a01557a832bae2b97ed1d3f *R/balancedFolds.R | ||
| b75c2c69378c782173ab4a38aca06a91 *R/coef_intsearch.R | ||
| 4978d8c02b55ebe56023b39397704e40 *R/nonzeroCoef.R | ||
| 5aeffa3cb87ae3ca4c2a2ba516fbb23e *R/peperr_glmnet.R | ||
| 50123ec5b8c9cda4524a0725d9e5dfd3 *R/plotCoef.R | ||
| 87479f0f199b359f6f14fb0a005f46d7 *R/plot_coef_glmnet.R | ||
| f13a06d844b4e98b65cf1fef7a593a43 *R/plot_summary_inter_search.R | ||
| 764f57f1f8279cd798c876475e42126c *R/stabilityselection.R | ||
| 828689648276bf83b98b3a830014de56 *R/summary_inter_search.R | ||
| 04cc7054551a3e7cf1fdbbeb10b2c2b5 *R/tune_glmnet_interval.R | ||
| 601e225f64250baecacd420b87d9c533 *inst/CITATION | ||
| 1bbfbff9c45b78b439740d30b3b4ed93 *inst/doc/c060_vignette_nojss.pdf | ||
| 1335532e0cfbc776e37678fdb952df7e *man/EPSGO.Rd | ||
| 63306392b3b85f6e550bf395f02b83f9 *man/PLL.coxnet.Rd | ||
| 46a994ab464367a5406a562eb9906e00 *man/Plot.coef.glmnet.Rd | ||
| 1e056ffd644d66b7eac7652e9058c5e3 *man/Plot.peperr.curves.Rd | ||
| 3e28aa4c1450b18c8ba1bd7b2ed2c916 *man/aggregation.auc.Rd | ||
| 8e694da5b53d433511b8f3044b2b08d7 *man/balancedFolds.Rd | ||
| 2429191ba9782c4cd38e70bfede43159 *man/coef.intsearch.Rd | ||
| 3dc6c991e1157bf327dc505075fe6355 *man/complexity.glmnet.Rd | ||
| 8237b6cd3a4551ef834f199fc86537a8 *man/fit.glmnet.Rd | ||
| 9d37d6ae2241a86dd6d1b5ebeb8f4e45 *man/plot.stabpath.Rd | ||
| 9dd7fe6f7fd33d9585358f50af9c268f *man/plot.summary.int.Rd | ||
| 4b3ee8af84c3adcea709fe1f8b3893bc *man/predictProb.coxnet.Rd | ||
| 62e8d584ca831a1af783e250bf302208 *man/predictProb.glmnet.Rd | ||
| c7f5d32a3ddd8ea90cb9e4d081a65507 *man/stabpath.Rd | ||
| 2eeeee63b9ea0c6fbfbce834a975d05d *man/stabsel.Rd | ||
| c7fa442f367258f30c613b9d15e0b0ad *man/summary.intsearch.Rd | ||
| d66db9676c465dfd3126b32856c62951 *man/tune.glmnet.interval.Rd |
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| import(glmnet, survival, parallel, peperr, penalizedSVM, lattice, mlegp, tgp) | ||
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| export(stabpath, | ||
| stabsel, | ||
| aggregation.auc, | ||
| complexity.glmnet, | ||
| fit.glmnet, | ||
| Plot.peperr.curves, | ||
| epsgo, | ||
| tune.glmnet.interval, | ||
| balancedFolds, | ||
| Plot.coef.glmnet | ||
| ) | ||
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| S3method("print","stabpath") | ||
| S3method("plot","stabpath") | ||
| S3method("PLL","coxnet") | ||
| S3method("predictProb","glmnet") | ||
| S3method("predictProb","coxnet") | ||
| S3method("summary","intsearch") | ||
| S3method("plot","sum.intsearch") | ||
| S3method("coef","sum.intsearch") | ||
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| importFrom("grDevices", "dev.off", "gray.colors", "pdf") | ||
| importFrom("graphics", "abline", "grid", "legend", "lines", "matplot", | ||
| "par", "plot", "polygon", "text", "axis") | ||
| importFrom("stats", "approx", "coef", "predict", "quantile", "runif", | ||
| "sd") |
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| 0.2-6 Package was about to be archived leading to a maintainer change. |
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