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4 followers · 11 following
  • University of Maryland at College Park
  • US

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Achievement: Arctic Code Vault ContributorAchievement: Pull Shark
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Achievements

Achievement: Arctic Code Vault ContributorAchievement: Pull Shark
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Pinned

  1. splatlab/mantis splatlab/mantis Public

    Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index

    C++ 80 20

  2. COMBINE-lab/pufferfish COMBINE-lab/pufferfish Public

    An efficient index for the colored, compacted, de Bruijn graph

    C 107 19

  3. COMBINE-lab/rainbowfish COMBINE-lab/rainbowfish Public

    A succinct colored dBG representation

    C++ 12

  4. RapClust_OrphanReads RapClust_OrphanReads Public

    Extended version of rapclust that also counts on orphan reads in clustering the contigs.

    Python

  5. herRingShiny herRingShiny Public

    Shiny codes for herring statistics and simulation results visualization

    R

  6. quickNBs quickNBs Public

    Quick Ipython notebooks that are used to calculate some basic stats for different tools

    Jupyter Notebook