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56 Open 255 Closed
56 Open 255 Closed
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Issues list

phyluce_probe_run_multiple_lastzs_sqlite --probefile
#338 opened Apr 23, 2024 by Jami5on
1
phyluce_assembly_match_contigs_to_barcodes, OSError: lastz: b'Can\'t understand "/Users/rodolfoprobst/Library/CloudStorage/Box-Box/Myrmelachista_all"\n(my guess) perhaps you have too many sequence files in the command\n
#335 opened Apr 8, 2024 by probstrodolfo
phyluce_assembly_get_match_counts, possible config issue
#334 opened Apr 3, 2024 by bbessesen
7
WARNING - Did not clean all fastq/fasta files
#333 opened Apr 1, 2024 by bbessesen
5
ConfigParser.NoSectionError: No section: 'names'
#332 opened Mar 17, 2024 by Jami5on
3
sqlite error in "Determining locus presence in multiple genomes" step of Tutorial IV
#329 opened Mar 1, 2024 by kautumn
Keep duplicates "contigs hitting multiple probes"
#328 opened Feb 14, 2024 by sbabbbie
3
Help: Assembly stuck on "Processing contigs"
#327 opened Feb 7, 2024 by chloejelley
3
"phyluce_ncbi_prep_uce_align_files_for_ncbi_targeted_locus_db" creates empty fsa and tbl files
#326 opened Feb 5, 2024 by claudiavaga
1
stampy: Error: Overfull hash table
#324 opened Nov 30, 2023 by Ruben9161
1
Error in the "phyluce_assembly_match_contigs_to_probes.job" step
#323 opened Nov 20, 2023 by LauraGonzalezMozo
1
No such column error in phyluce_assembly_get_fastas_from_match_counts
#320 opened Oct 11, 2023 by louisfnastasi
1
Problem with phyluce_assembly_match_contigs_to_probes for Trinity and Spades assemblies
#316 opened Sep 28, 2023 by charbeez
2
Phasing snps fasta files
#315 opened Sep 19, 2023 by nicolashazzi23
6
NoneType
#312 opened Sep 6, 2023 by ErikaGress
3
phyluce installation: dependencies missing?
#311 opened Sep 1, 2023 by jbernot
@brantfaircloth
9
Concatenate alignments does not work with phylip-extended format alignments
#307 opened Jul 18, 2023 by brantfaircloth
6
Ilumiprocessor config file issues
#306 opened Jul 5, 2023 by tobihays
2
Combined/merged sequence runs - best point to merge?
#305 opened Jun 6, 2023 by eeeaston
3
Insufficient memory fir the java runtime environment to continue. NMAP- Native memory allocation failed
#304 opened May 29, 2023 by Sarangkrr
Mapping against a Trinity genome assembly?
#303 opened May 4, 2023 by Trinity2018
phyluce_assembly_extract_contigs_to_barcodes
#301 opened Mar 30, 2023 by jovana03
1
phyluce failed to find reads during phasing workflow Bug
#296 opened Mar 9, 2023 by andreluizherpeto
@brantfaircloth
3
phyluce_assembly_match_contigs_to_probes stopped working
#295 opened Mar 5, 2023 by marianamateos
1
Using the --continue option from spades
#291 opened Feb 15, 2023 by aureliendejode
1
ProTip! no:milestone will show everything without a milestone.