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A bed.gz file is successfully created when I run the code:
$ python SiLiCO.py -i ../NC_002695.fasta -n
However when I pass the -f flag:
$ python SiLiCO.py -i ../NC_002695.fasta -f -n
I am getting permission denied:
Converting simulated BED files to FASTA files... Traceback (most recent call last): File "SiLiCO.py", line 166, in <module> main(sys.argv[1:]) File "SiLiCO.py", line 157, in main convertToFasta(infileName, outfileName) File "/Users/m31237/Desktop/Simulations/SiLiCO/convertToFasta.py", line 20, in convertToFasta b = a.save_seqs(str(nameRoot) + ".fa") File "/Users/m31237/miniconda3/lib/python3.6/site-packages/pybedtools/bedtool.py", line 2414, in save_seqs fout = open(fn, 'w') PermissionError: [Errno 13] Permission denied: '/simulated_read_positions_trial_0.fa'
The text was updated successfully, but these errors were encountered:
A bed.gz file is successfully created when I run the code:
$ python SiLiCO.py -i ../NC_002695.fasta -n
However when I pass the -f flag:
$ python SiLiCO.py -i ../NC_002695.fasta -f -n
I am getting permission denied:
Converting simulated BED files to FASTA files... Traceback (most recent call last): File "SiLiCO.py", line 166, in <module> main(sys.argv[1:]) File "SiLiCO.py", line 157, in main convertToFasta(infileName, outfileName) File "/Users/m31237/Desktop/Simulations/SiLiCO/convertToFasta.py", line 20, in convertToFasta b = a.save_seqs(str(nameRoot) + ".fa") File "/Users/m31237/miniconda3/lib/python3.6/site-packages/pybedtools/bedtool.py", line 2414, in save_seqs fout = open(fn, 'w') PermissionError: [Errno 13] Permission denied: '/simulated_read_positions_trial_0.fa'
The text was updated successfully, but these errors were encountered: