Skip to content
/ epiviz Public

EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding of correlations between various genome features.

License

Notifications You must be signed in to change notification settings

epiviz/epiviz

Repository files navigation

Epiviz

Epiviz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding of correlations between various genome features.

For more information, visit - http://epiviz.github.io/

Using any PHP supported webserver

Copy the Epiviz directory to the webserver configured directory. Navigate to /epiviz/index.php on your browser.

Using PHP

PHP (http://php.net/) lets your run local webservers. Navigate to localhost:8181 on your browser. To run epiviz use:

php.exe -S localhost:8181 -t <location of the epiviz directory>

Using Docker

This repository includes a Dockerfile to run a webserver that serves the epiviz web application. It includes a site-settings.js file that sets up data backends pointing to the University of Maryland. Update that file to use a different backend. It is registered in the DockerHub registry: (https://hub.docker.com/r/epiviz/epiviz/)[https://hub.docker.com/r/epiviz/epiviz/]. To run it use:

docker pull epiviz/epiviz
docker run --name epiviz-app -d -p 80:80 epiviz/epiviz

To Compile closure

java -jar compiler.jar --js_output_file=epiviz-compiled-jar.js --js 'src/epiviz/**' --js '!src/epiviz/default-settings.js' --js '!src/epiviz/epivizr-settings.js' --js '!src/epiviz/standalone-settings.js' --entry_point=goog:epiviz.main

About

EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding of correlations between various genome features.

Topics

Resources

License

Stars

Watchers

Forks

Packages

No packages published

Contributors 4

  •  
  •  
  •  
  •