Update 78 packages

[Bisaloo]

🤖 This is an automated build

This will update 78 packages in your lesson with the following versions:

# NEW OR REMOVED PACKAGES -------------------------------
- class       [required by classInt, e1071]
- cluster     [required by Hmisc]
- foreign     [required by Hmisc, maptools]
- KernSmooth  [required by classInt]
- lattice     [required by coda, maptools, Matrix, and 3 others]
- MASS        [required by fitdistrplus, ggplot2, MCMCpack, and 2 others]
- nnet        [required by Hmisc]
- survival    [required by fitdistrplus, quantreg]
- class        [7.3-22 -> *]
- cluster      [2.1.6 -> *]
- desc         [1.4.2 -> 1.4.3]
- foreign      [0.8-86 -> *]
- KernSmooth   [2.23-22 -> *]
- lattice      [0.22-5 -> *]
- MASS         [7.3-60 -> *]
- nnet         [7.3-19 -> *]
- survival     [3.5-7 -> *]
- pak          [* -> 0.7.1]
- vaccineff    [epiverse-trace/vaccineff@main -> *]
- R            [4.2.2 -> 4.3.2]

# CRAN -----------------------------------------------------------------------
- bayesplot     [1.10.0 -> 1.11.0]
- BH            [1.81.0-1 -> 1.84.0-0]
- checkmate     [2.3.0 -> 2.3.1]
- cli           [3.6.1 -> 3.6.2]
- coda          [0.19-4 -> 0.19-4.1]
- commonmark    [1.9.0 -> 1.9.1]
- config        [0.3.1 -> 0.3.2]
- cowplot       [1.1.1 -> 1.1.3]
- data.table    [1.14.8 -> 1.15.0]
- DBI           [1.1.3 -> 1.2.1]
- digest        [0.6.33 -> 0.6.34]
- dplyr         [1.1.2 -> 1.1.4]
- e1071         [1.7-13 -> 1.7-14]
- fansi         [1.0.4 -> 1.0.6]
- ggfittext     [0.10.1 -> 0.10.2]
- ggridges      [0.5.4 -> 0.5.6]
- glue          [1.6.2 -> 1.7.0]
- htmlwidgets   [1.6.3 -> 1.6.4]
- igraph        [1.5.1 -> 2.0.1.1]
- jsonlite      [1.8.7 -> 1.8.8]
- maptools      [1.1-6 -> *]
- markdown      [1.11 -> 1.12]
- Matrix        [1.6-4 -> 1.6-5]
- matrixStats   [1.1.0 -> 1.2.0]
- MCMCpack      [1.6-3 -> 1.7-0]
- mgcv          [1.9-0 -> 1.9-1]
- patchwork     [1.1.3 -> 1.2.0]
- pkgbuild      [1.4.2 -> 1.4.3]
- processx      [3.8.2 -> 3.8.3]
- progress      [1.2.2 -> 1.2.3]
- ps            [1.7.5 -> 1.7.6]
- purrr         [1.0.1 -> 1.0.2]
- QuickJSR      [1.0.8 -> 1.1.3]
- Rcpp          [1.0.11 -> 1.0.12]
- readr         [2.1.4 -> 2.1.5]
- reprex        [2.0.2 -> 2.1.0]
- rgdal         [1.6-5 -> *]
- rlang         [1.1.1 -> 1.1.3]
- rpart         [4.1.21 -> 4.1.23]
- rprojroot     [2.0.4 -> *]
- rstan         [2.32.3 -> 2.32.5]
- rstantools    [2.3.1.1 -> 2.4.0]
- s2            [1.1.4 -> 1.1.6]
- sass          [0.4.7 -> 0.4.8]
- sf            [1.0-14 -> 1.0-15]
- sp            [2.0-0 -> 2.1-3]
- StanHeaders   [2.26.28 -> 2.32.5]
- tensorA       [0.36.2 -> 0.36.2.1]
- terra         [1.7-55 -> 1.7-71]
- tidyr         [1.3.0 -> 1.3.1]
- timechange    [0.2.0 -> 0.3.0]
- utf8          [1.2.3 -> 1.2.4]
- uuid          [repo: RSPM -> CRAN; ver: 1.1-1 -> 1.2-0]
- viridis       [0.6.4 -> 0.6.5]
- vroom         [1.6.4 -> 1.6.5]
- withr         [2.5.2 -> 3.0.0]
- xfun          [0.40 -> 0.41]
- yaml          [2.3.7 -> 2.3.8]
- class         [* -> 7.3-22]
- cluster       [* -> 2.1.6]
- foreign       [* -> 0.8-86]
- KernSmooth    [* -> 2.23-22]
- lattice       [* -> 0.22-5]
- MASS          [* -> 7.3-60.0.1]
- nnet          [* -> 7.3-19]
- survival      [* -> 3.5-7]

# GitHub ---------------------------------------------------------------------
- epiCo         [epiverse-trace/epiCo@HEAD: c9e5bcad -> f85e5d08]
- serofoi       [epiverse-trace/serofoi@HEAD: 4a25b104 -> f3839277]
- sivirep       [epiverse-trace/sivirep@dev: 837948a2 -> f66542c3]

# RSPM -----------------------------------------------------------------------
- httr2         [* -> 1.0.0]
- showtext      [* -> 0.9-6]
- showtextdb    [* -> 3.0]
- sysfonts      [* -> 0.8.8]

# https://carpentries.r-universe.dev -----------------------------------------
- curl          [repo: CRAN -> https://carpentries.r-universe.dev; ver: 5.1.0 -> 5.2.0]
- ragg          [repo: CRAN -> https://carpentries.r-universe.dev; ver: 1.2.6 -> 1.2.7]
- stringi       [repo: CRAN -> https://carpentries.r-universe.dev; ver: 1.8.2 -> 1.8.3]
- xml2          [repo: CRAN -> https://carpentries.r-universe.dev; ver: 1.3.5 -> 1.3.6]

⏱️ In a few minutes, a comment will appear that will show you how the output has changed based on these updates.

If you want to inspect these changes locally, you can use the following code to check out a new branch:

git fetch origin update/packages
git checkout update/packages

• Auto-generated by create-pull-request on 2024-02-06

[github-actions]

🆗 Pre-flight checks passed 😃

This pull request has been checked and contains no modified workflow files or spoofing.

Results of any additional workflows will appear here when they are done.